Table 2.
Data types/ submission types | PRIDE | PASSEL | MassIVE | jPOST | iProX | Panorama Public | Peptide Atlas |
---|---|---|---|---|---|---|---|
Types of data access | |||||||
Web interface | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
Application Programming Interface | Yes (42) | Yes | Yes | Yes | Yes | Yes | |
Protocol for file transfer (download/ upload) | FTP, Aspera | FTP | FTP | FTP | HTPP, Aspera | WebDAV | FTP |
Reviewer private access | File download | File download | File download, web interface | File download | File download, web interface | File download, web interface | N/A |
General functionality/web visualization | |||||||
Dataset centric view | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
Protein centric view across resource | Yes | Yes (23) | Yes | ||||
Annotated mass spectra | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
Chromatograms | Yes | Yes | |||||
Support for RPXD datasets | Yes | Yes | |||||
Standalone tools for re-using datasets | |||||||
Data Visualisation | PRIDE Inspector (10) | Skyline (16) | |||||
Data Analysis | PeptideShaker (43) | Skyline | |||||
Online data analysis pipelines | 23 different workflows |