Table 2.
Main functionality offered by the PX resources
| Data types/ submission types | PRIDE | PASSEL | MassIVE | jPOST | iProX | Panorama Public | Peptide Atlas |
|---|---|---|---|---|---|---|---|
| Types of data access | |||||||
| Web interface | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
| Application Programming Interface | Yes (42) | Yes | Yes | Yes | Yes | Yes | |
| Protocol for file transfer (download/ upload) | FTP, Aspera | FTP | FTP | FTP | HTPP, Aspera | WebDAV | FTP |
| Reviewer private access | File download | File download | File download, web interface | File download | File download, web interface | File download, web interface | N/A |
| General functionality/web visualization | |||||||
| Dataset centric view | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
| Protein centric view across resource | Yes | Yes (23) | Yes | ||||
| Annotated mass spectra | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
| Chromatograms | Yes | Yes | |||||
| Support for RPXD datasets | Yes | Yes | |||||
| Standalone tools for re-using datasets | |||||||
| Data Visualisation | PRIDE Inspector (10) | Skyline (16) | |||||
| Data Analysis | PeptideShaker (43) | Skyline | |||||
| Online data analysis pipelines | 23 different workflows |