Table 2.

The resources released/updated in this work and their accessibility

Module	Description	Content	URL
PlantTFDB	A portal for users to access the TF repertoires and corresponding annotations in plants.	TF knowledge base Extended TF repertoires (TFext)	http://planttfdb.cbi.pku.edu.cn/index.php http://planttfdb.cbi.pku.edu.cn/index_ext.php
cis-Map	A genome browser set up for users to browse genome alignments, conservation data and regulatory elements.	Pairwise genome alignments Multiple genome alignments Conserved elements PhastCons scores PhyloP scores Conserved TFBS FunTFBS	http://plantregmap.cbi.pku.edu.cn/cis-map.php
Network	A portal for users to retrieve and visualize regulations.	Regulations inferred by conserved TFBS and FunTFBS	http://plantregmap.cbi.pku.edu.cn/network.php
Tools	A set of online tools for ID mapping, functional TFBS screening, regulation prediction and TF enrichment analysis.	ID mapping FunTFBS	http://plantregmap.cbi.pku.edu.cn/id_mapping.php http://plantregmap.cbi.pku.edu.cn/funtfbs.php
		Regulation prediction	http://plantregmap.cbi.pku.edu.cn/regulation_prediction.php
		TF enrichment	http://plantregmap.cbi.pku.edu.cn/tf_enrichment.php
Download	A portal for users to download genome alignments, conservation data, regulatory elements and regulations.	Download individual files via HTTP Batch download via FTP	http://plantregmap.cbi.pku.edu.cn/download.php ftp://ftp.cbi.pku.edu.cn/pub/database/PlantRegMap/