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. 2019 Oct 23;48(D1):D1063–D1068. doi: 10.1093/nar/gkz925

Figure 2.

Figure 2.

KO-trait association detected between AT1G57570 and days of seed dry storage required to reach 50% germination (DSDS50) reported by (1). (A) Predicted natural knockout alleles identified in (35). (B) Boxplots showing DSDS50 for accessions with functional (black) versus KO alleles (orange) of AT1G57570. The vertical lines mark the medians while the boxes indicate the interquartile ranges (IQR) between the 25th and 75th quantiles, and the whiskers mark no >1.5 IQR. More broadly, there was a tendency for significant KO allele associations to have positive beta coefficients. Bar plots show the relative frequency of positive and negative beta (β) coefficients across all traits tested (***P < 2 × 10−16, *P < 0.05, Chi-squared tests), for (C) all associations regardless of significance and for associations subsetted by varying significance thresholds: (D) P < 0.05, (E) P < 0.01, (F) P < 0.001, (G) P < 1 × 10−4, (H) P < 2.4 × 10−5 (threshold after Bonferroni correction) (I) permutation-based significance thresholds.