Table 2.
Exon skipping events associated with mutations
| Gene | Cancer type | ESID | Gene | Cancer type | ESID | Gene | Cancer type | ESID |
|---|---|---|---|---|---|---|---|---|
| AASS | BRCA | exon_skip_479254 | HNRNPC | READ | exon_skip_111139 | RASA1 | HNSC | exon_skip_436351 |
| ACADVL | HNSC | exon_skip_148534 | IRF3 | SKCM | exon_skip_320801 | RB1 | LGG | exon_skip_100319 |
| ACE2 | LIHC | exon_skip_514046 | IRF3 | LIHC | exon_skip_320801 | RB1 | LUSC | exon_skip_100319 |
| ACSL1 | BRCA | exon_skip_433327 | KCTD10 | STAD | exon_skip_96034 | RB1 | SKCM | exon_skip_100319 |
| ACTR5 | HNSC | exon_skip_351842 | KDM4C | LIHC | exon_skip_495073 | RB1 | SARC | exon_skip_100320 |
| AK9 | SKCM | exon_skip_461739 | LAMTOR4 | CESC | exon_skip_468895 | RB1 | SKCM | exon_skip_100321 |
| AP1G2 | KIRP | exon_skip_111822 | LPCAT1 | COAD | exon_skip_440961 | RBBP7 | BRCA | exon_skip_514095 |
| AP1G2 | UCS | exon_skip_111839 | LRRC37B | TGCT | exon_skip_150743 | RBL2 | LIHC | exon_skip_136487 |
| ARAP1 | HNSC | exon_skip_75409 | LRRC49 | LUSC | exon_skip_123285 | RBM10 | LUAD | exon_skip_509946 |
| ARAP2 | STAD | exon_skip_428975 | LZTFL1 | SKCM | exon_skip_382808 | RBM11 | CESC | exon_skip_358911 |
| ARHGAP4 | CESC | exon_skip_517379 | MAOB | LIHC | exon_skip_514541 | RBM23 | KIRP | exon_skip_111436 |
| ARSA | ESCA | exon_skip_370946 | MAP4K4 | SKCM | exon_skip_328236 | RBM27 | SKCM | exon_skip_438439 |
| ATF7IP | LUAD | exon_skip_80383 | MCTP2 | SKCM | exon_skip_125176 | RWDD2B | LUAD | exon_skip_361480 |
| ATXN7L1 | BRCA | exon_skip_478799 | MET | LUAD | exon_skip_470683 | SAAL1 | LIHC | exon_skip_69749 |
| AXIN1 | LIHC | exon_skip_140168 | MFN1 | BRCA | exon_skip_379593 | SAFB | LUSC | exon_skip_301206 |
| BAP1 | UVM | exon_skip_384821 | MFSD11 | BRCA | exon_skip_156579 | SCRIB | STAD | exon_skip_493826 |
| BCHE | LIHC | exon_skip_389735 | MIB2 | LIHC | exon_skip_292 | SEMA6C | LUAD | exon_skip_30610 |
| BRCC3 | READ | exon_skip_513411 | MPP1 | LIHC | exon_skip_517757 | SIK3 | BRCA | exon_skip_77623 |
| BSDC1 | SKCM | exon_skip_24351 | MPP1 | LIHC | exon_skip_517758 | SLC44A1 | LUSC | exon_skip_497929 |
| BSDC1 | SKCM | exon_skip_24356 | MSH2 | STAD | exon_skip_325448 | SLC6A9 | BRCA | exon_skip_25867 |
| C16orf70 | OV | exon_skip_137511 | MSI2 | SARC | exon_skip_154718 | SLCO2A1 | LUAD | exon_skip_388682 |
| C20orf96 | LGG | exon_skip_354191 | MYO9B | LUAD | exon_skip_303297 | SMARCA1 | KIRP | exon_skip_516648 |
| CCDC125 | SKCM | exon_skip_442509 | NF1 | PCPG | exon_skip_150648 | SMARCA2 | KIRC | exon_skip_494778 |
| CCDC90B | HNSC | exon_skip_76335 | NF2 | CHOL | exon_skip_364330 | SMARCC1 | HNSC | exon_skip_383264 |
| CD44 | SKCM | exon_skip_57862 | NSFL1C | LUAD | exon_skip_354315 | SNRNP200 | KIRP | exon_skip_341775 |
| CDH1 | BRCA | exon_skip_138094 | OCIAD1 | LGG | exon_skip_423495 | SPCS1 | HNSC | exon_skip_375123 |
| CHD3 | SKCM | exon_skip_148936 | OCRL | LUSC | exon_skip_512323 | STAG2 | GBM | exon_skip_512303 |
| CHEK2 | LUSC | exon_skip_368202 | ODF2 | PAAD | exon_skip_499697 | SUPT3H | SKCM | exon_skip_459890 |
| CNOT6 | LUAD | exon_skip_440379 | PACRGL | LUSC | exon_skip_422774 | TBL1X | UCEC | exon_skip_509098 |
| COL13A1 | LUAD | exon_skip_42139 | PEA15 | LGG | exon_skip_12856 | TBX3 | STAD | exon_skip_96977 |
| COL7A1 | LUSC | exon_skip_383673 | PELI2 | LUSC | exon_skip_106790 | TCTN2 | THCA | exon_skip_88383 |
| COPS3 | SKCM | exon_skip_287002 | PGLYRP2 | LIHC | exon_skip_316122 | TEP1 | LUAD | exon_skip_110964 |
| CREBBP | CESC | exon_skip_141389 | PHKA2 | LUAD | exon_skip_514168 | TERF1 | OV | exon_skip_484059 |
| CTCF | BRCA | exon_skip_137805 | PHKA2 | BRCA | exon_skip_514195 | TNFRSF10A | PAAD | exon_skip_488782 |
| DIAPH3 | SKCM | exon_skip_103986 | PIK3R1 | SKCM | exon_skip_435166 | TP53 | OV | exon_skip_286364 |
| DLG3 | STAD | exon_skip_511069 | PIK3R1 | COAD | exon_skip_435167 | TP53 | OV | exon_skip_286376 |
| DSG2 | LUAD | exon_skip_296226 | PLEC | LUSC | exon_skip_494000 | TP53 | UCS | exon_skip_286379 |
| EEA1 | STAD | exon_skip_95294 | PLEC | SKCM | exon_skip_494000 | TP53 | BRCA | exon_skip_286384 |
| EPB41L4A | LUAD | exon_skip_443476 | PLOD3 | LUSC | exon_skip_478451 | TP53 | KICH | exon_skip_286388 |
| FARP2 | ESCA | exon_skip_336006 | PPP6C | SKCM | exon_skip_506902 | TRAPPC2L | BRCA | exon_skip_139393 |
| FAS | DLBC | exon_skip_43777 | PROM1 | BRCA | exon_skip_428630 | TULP4 | BRCA | exon_skip_455061 |
| FN1 | SKCM | exon_skip_346530 | PTCH1 | ESCA | exon_skip_505102 | UBE2D3 | LIHC | exon_skip_431479 |
| GCSAM | DLBC | exon_skip_386471 | PTEN | COAD | exon_skip_43702 | UBE2E1 | CESC | exon_skip_372157 |
| GLRX3 | LUAD | exon_skip_46116 | PTEN | CESC | exon_skip_43707 | USP40 | LUAD | exon_skip_347441 |
| GNB5 | LUAD | exon_skip_127162 | PTEN | SKCM | exon_skip_43707 | YIF1A | STAD | exon_skip_74538 |
| GPR143 | SKCM | exon_skip_513862 | PTEN | BRCA | exon_skip_43714 | YLPM1 | SKCM | exon_skip_108215 |
| HAUS6 | STAD | exon_skip_502793 | RABL3 | LUSC | exon_skip_386919 | ZNF512B | LUAD | exon_skip_358876 |