Table 1.
Statistics of ChimerDB 4.0
| ChimerKB | ChimerPub | ChimerSeq | |||
|---|---|---|---|---|---|
| Literature curation | 147 | Information available | TCGA | 49 648 | |
| COSMIC | 331 | Translocation | 925 | STAR-Fusion | 28 749 |
| mRNA Sequence | 272 | Disease | 1075 | FusionScan | 12 070 |
| Mitelman, OMIM, GenBank | 459 | Validation method | 1049 | TumorFusions | 18 404 |
| ChimerPub-Plus | 777 | TCGA FAWG | 23 978 | ||
| TopHat-Fusion | 1624 | ||||
| ChimerDB 2.0 | 142 | ||||
| ChiTaRS 2.1 | 16 270 | ||||
| Panel of Normals | 2985 | ||||
| Total | 1597 | Total | 1257 | Total | 65 945 |
| ChimerPub supported | 937 | ChimerKB supported | 937 | ChimerKB supported | 240 |
| ChimerSeq supported | 240 | ChimerSeq supported | 205 | ChimerPub supported | 205 |
| ChimerSeq-Plus | 21 106 | ||||
| Known breakpoint cases | Novel fusion a | ||||
| Exon junction | 1063 | TCGA | 52 534 | ||
| ChiTaRS | 16 152 | ||||
All numbers represent the number of unique fusion genes.
aTranscripts not included in ChimerKB and ChimerPub were classified as novel fusion.