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. 2019 Nov 14;48(D1):D166–D173. doi: 10.1093/nar/gkz986

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© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 4. — Combined visualization of putative binding sites for three RBPs in two genes through a standard scatter plot and an embedded Integrative Genome Browser. (i) Example of oRNAment transcript-level view scatter plot of three RBPs (ANKHD1, FUS and lark) for two mRNAs (SMAD2 and SMAD4) and (ii) Integrative Genome Browser view incorporating the same results when searching for their loci [IGV Locus search input in the form: 18:47783250–47964001 18:51000898–51113761 (i.e. with a space separating the coordinates)]. Two examples of corresponding motif instances (lark in SMAD2 and FUS in SMAD4) between the two types of analysis are shown.