Table 2.
Query fields and examples in smart search system
| Query field | Query content | Query example |
|---|---|---|
| Name | Locus/Transcript/Protein name | GhRDL1 |
| Name | Locus/Transcript/Protein ID | Ga14g01129.F1 |
| Name | TAIR homolog gene symbol | ACX3 |
| GO | GO accession ID | GO:0000032 |
| KO | KO accession ID | K11091 |
| KO | KEGG ontology name | ATPF1B, atpD |
| EC | Enzyme Commission ID | 1.17.7.2 |
| EC | Enzyme Commission name | Very-long-chain 3-oxoacyl-CoA synthase |
| KEGG pathway | KEGG pathway ID | ko04024 |
| KEGG pathway | KEGG pathway name | cAMP signaling pathway |
| KEGG model | KEGG model ID | M00087 |
| KEGG model | KEGG model name | Fe-S protein |
| KEGG disease | KEGG disease ID | H00254 |
| KEGG disease | KEGG disease name | Lysosomal acid lipase deficiency |
| InterPro domain | InterPro ID | IPR001736 |
| InterPro domain | InterPro domain name | cd01254 |
| Pfam domain | Pfam ID | PF00614.22 |
| Pfam domain | Pfam domain name | PLDc |
| CDD domain | NCBI CDD ID | 197200 |
| TF family | TF family name | C2H2 |
| eggNOG gene family | eggNOG root name | EOY06593 |
| eggNOG gene family | eggNOG hit gene | COG1502 |