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. 2020 Apr 3;11:393. doi: 10.3389/fmicb.2020.00393

TABLE 1.

Publicly available data from gut microbiota studies.

Project, database, or repository name Number of cases Sample types Disease related (Y/N/B) Data availability (Y/N/Conditional) Website
Human Microbiome Project (HMP1) 300 Nasal passages, oral cavity, skin, gastrointestinal tract, and urogenital tract N Y NIH Human Microbiome Project - Home, 2019
Integrative Human Microbiome Project (iHMP): pregnancy and preterm birth (MOMS-PI) ∼2,000 Mouth, skin, vagina, and rectum Y Y NIH Human Microbiome Project - Home, 2019
Integrative Human Microbiome Project (iHMP): onset of IBD (IBDMDB) ∼90 Stool and blood Y Y NIH Human Microbiome Project - Home, 2019
Integrative Human Microbiome Project (iHMP): onset of type 2 diabetes (T2D) ∼100 Fecal, nasal, blood, serum, and urine Y Y NIH Human Microbiome Project - Home, 2019
American Gut Project (AGP) >3,000 Stool and swabs from skin/mouth B Y American Gut, 2019
Personal Genome Project microbiota component (PGP) >5,000 Skin/oral/fecal Y Data – The Harvard Personal Genome Project (PGP), 2019
TwinsUK >11,000 Multiple C TwinsUK, 2019
Global Gut Project (GG) 531 Fecal N Y Yatsunenko et al., 2012
Project CARDIOBIOME >4,000 N
Pediatric Metabolism and Microbiome Repository (PMMR) ∼350 Human microbial cell lines, stool, and/or DNA and RNA Y N https://clinicaltrials.govClinicalTrials.gov, 2019
Lung HIV Microbiome Project (LHMP) 162 Lung, nasal, and/or oropharyngeal cavities Y Y BioLINCC, 2019
The Study of the Impact of Long-Term Space Travel on the Astronauts’ Microbiome (Microbiome) 9 Saliva and gastrointestinal N N NASA, 2019
Michigan Microbiome Project (MMP) N The Michigan Microbiome Project, 2019
uBiome Gut, mouth, nose, genitals, and skin B C
Human Oral Microbiome Database (eHOMD) Upper digestive and upper respiratory tracts, oral cavity, pharynx, nasal passages, sinuses, and esophagus Y HOMD : Human Oral Microbiome Database, 2019
Human Pan-Microbe Communities (HPMC) >1,800 Gastrointestinal B Y HPMCD: Human Pan Microbial Communities Database, 2019
Curated Metagenomic Data >5,000 Multiple B Y curatedMetagenomicData, 2019
European Nucleotide Archive Y European Nucleotide Archive EMBL-EBI, 2019
EBI-metagenomics portal samples >20,000 Multiple B Y EMBL-EBI Mg, 2019
MG-RAST >10,000 Multiple B Y MG-RAST, 2019