Table 3.
Summary of the detected MQTLs for YLD, GW, HD, PH, and TN traits in rice under unstressed condition
| Trait | Chr. | MQTL | Flanking markers | Position on the consensus reference map (cM) | Confidence interval (cM) | Genomic position on the rice genome (Mb) | Number of initial QTLs | Number of studies | Number of Populations | Number of genes laying at the MQTL interval | Referencesa |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GW | 1 | MQTL-GW1 | RM3233-C52458s | 32.27 | 3.73 | 5.05-6.58 | 7 | 5 | 5 | 175 | |
| 1 | MQTL-GW2 | RM3366-RM1349 | 103.77 | 2.67 | 24.26-25.07 | 5 | 3 | 4 | 108 | ||
| 1 | MQTL-GW3 | RM1095-RM5914 | 129.95 | 2.01 | 30.92-31.50 | 2 | 2 | 2 | 77 | ||
| 1 | MQTL-GW4 | RM3447-RM6618 | 144.29 | 3.07 | 35.25-37.01 | 7 | 4 | 4 | 221 | ||
| 1 | MQTL-GW5 | RM8049-RM6831 | 178.53 | 3.35 | 42.07-43.17 | 2 | 2 | 2 | 165 | ||
| 2 | MQTL-GW6 | RM452-G243A | 49.85 | 5.97 | 9.56-11.75 | 10 | 6 | 7 | 165 | ||
| 2 | MQTL-GW7 | RM7245-RM221 | 110.97 | 6.42 | 26.44-27.60 | 2 | 2 | 2 | 147 | ||
| 2 | MQTL-GW8 | R2216-RM5993 | 124.58 | 2.79 | 28.41-29.70 | 4 | 3 | 3 | 171 | ||
| 2 | MQTL-GW9 | RM8030-RM5958 | 140.25 | 1.06 | 32.48-32.83 | 2 | 2 | 2 | 48 | ||
| 3 | MQTL-GW10 | R134-RM4512 | 46.9 | 5.21 | 9.49-11.30 | 3 | 3 | 3 | 271 | ||
| 3 | MQTL-GW11 | RM6931-C11260S | 70.66 | 2.07 | 14.98-15.47 | 7 | 4 | 4 | 37 | ||
| 3 | MQTL-GW12 | S1466-RM6425 | 92.12 | 3.12 | 22.98-23.82 | 3 | 2 | 2 | 59 | [10] | |
| 3 | MQTL-GW13 | R2462-R63525 | 136.1 | 0.8 | 30.10-30.38 | 2 | 2 | 2 | 37 | ||
| 4 | MQTL-GW14 | RM5687-RM6314 | 34.77 | 15.5 | 15.74-18.44 | 3 | 2 | 2 | 136 | ||
| 4 | MQTL-GW15 | R278-RM2848 | 74.44 | 0.4 | 23.43-24.49 | 5 | 4 | 4 | 158 | [10] | |
| 4 | MQTL-GW16 | R2737-RM5503 | 97.98 | 4.41 | 29.15-30.17 | 10 | 4 | 4 | 139 | ||
| 5 | MQTL-GW17 | S2309-S2136 | 11.47 | 3.27 | 0.94-1.29 | 2 | 2 | 2 | 47 | ||
| 5 | MQTL-GW18 | RM7349-RM3322 | 30.98 | 2.01 | 3.24-4.26 | 5 | 3 | 3 | 106 | ||
| 5 | MQTL-GW19 | S21985S-E2801S | 60.92 | 6.32 | 14.54-16.95 | 3 | 2 | 2 | 181 | ||
| 5 | MQTL-GW20 | RM6282-E10316S | 80.4 | 5.48 | 20.24-21.13 | 6 | 3 | 3 | 103 | ||
| 5 | MQTL-GW21 | RG470-RM3620 | 102.11 | 3.59 | 23.48-25.20 | 2 | 2 | 2 | 204 | ||
| 6 | MQTL-GW22 | R10069S-RM3330 | 59.06 | 2.81 | 10.46-11.06 | 6 | 5 | 5 | 47 | ||
| 7 | MQTL-GW23 | RM5100+RM5752 | 10.75 | 2.19 | 2.21-2.56 | 2 | 2 | 2 | 23 | ||
| 7 | MQTL-GW24 | R646-RM1048 | 64.86 | 11.35 | 16.96-20.16 | 6 | 5 | 5 | 261 | ||
| 8 | MQTL-GW25 | S12665S-C1251S | 58.89 | 5.8 | 5.80-8.15 | 3 | 2 | 2 | 139 | ||
| 8 | MQTL-GW26 | S3680-RM8264 | 80.09 | 6.78 | 18.25-19.83 | 3 | 3 | 3 | 128 | ||
| 9 | MQTL-GW27 | C1454-C397 | 78.8 | 7.33 | 9.63-12.28 | 3 | 3 | 3 | 169 | ||
| 9 | MQTL-GW28 | S4677S-RM7039 | 92.53 | 1.96 | 13.62-14.68 | 4 | 3 | 3 | 107 | ||
| 10 | MQTL-GW29 | RM6144-RM3229 | 40.14 | 6.1 | 15.60-16.69 | 4 | 3 | 3 | 101 | ||
| 10 | MQTL-GW30 | RM7300-RM147 | 61.67 | 2.23 | 19.93-20.94 | 4 | 2 | 2 | 140 | ||
| 11 | MQTL-GW31 | RM1812-RM1124 | 22.71 | 7.29 | 2.40-3.85 | 3 | 2 | 2 | 155 | ||
| 11 | MQTL-GW32 | S20163S-RM3701 | 38.66 | 11.35 | 5.37-8.10 | 2 | 2 | 2 | 244 | ||
| 11 | MQTL-GW33 | R10329S-RM4746 | 69.14 | 0.86 | 16.04-16.57 | 5 | 2 | 2 | 29 | ||
| 12 | MQTL-GW34 | RM3326-C11001SA | 77.56 | 6.92 | 21.74-22.45 | 4 | 3 | 3 | 35 | ||
| HD | 1 | MQTL-HD1 | C12072S-C52458 | 31.9 | 4.1 | 5.51-6.58 | 2 | 2 | 2 | 128 | |
| 2 | MQTL-HD2 | E50474S-RM3505 | 32.82 | 6.81 | 5.64-7.54 | 3 | 2 | 2 | 212 | ||
| 2 | MQTL-HD3 | C1236-R418 | 117.41 | 8.35 | 27.36-28.94 | 2 | 2 | 2 | 180 | ||
| 2 | MQTL-HD4 | R685-RG256 | 134.61 | 1.2 | 31.26-33.93 | 4 | 4 | 4 | 363 | ||
| 3 | MQTL-HD5 | C51477S-RM6013 | 5.78 | 1.85 | 1.03-1.66 | 11 | 8 | 11 | 79 | ||
| 3 | MQTL-HD6 | C68-RM6496 | 44.5 | 2.18 | 9.31-10.14 | 8 | 5 | 5 | 130 | ||
| 3 | MQTL-HD7 | RM5626-RM7097 | 104.68 | 10.87 | 24.86-26.87 | 3 | 2 | 2 | 196 | ||
| 3 | MQTL-HD8 | R2404-RM3867 | 142.69 | 0.59 | 31.38-31.74 | 13 | 8 | 11 | 61 | ||
| 4 | MQTL-HD9 | R2811-RM4835 | 12.69 | 8.62 | 2.08-6.98 | 3 | 3 | 3 | 225 | ||
| 4 | MQTL-HD10 | RM6314-S10644 | 42.81 | 10.76 | 18.44-19.04 | 2 | 2 | 2 | 52 | ||
| 5 | MQTL-HD11 | S2467-RM3969 | 69.48 | 7.81 | 17.14-18.93 | 3 | 2 | 2 | 169 | ||
| 5 | MQTL-HD12 | E60663S-R1714 | 99.43 | 26.84 | 21.14-27.80 | 2 | 2 | 2 | 874 | ||
| 6 | MQTL-HD13 | C425A-RM5218 | 8.38 | 2.6 | 1.64-2.36 | 3 | 3 | 3 | 112 | ||
| 6 | MQTL-HD14 | RM6836-RM8238 | 54.49 | 0.14 | 9.30-9.45 | 4 | 3 | 3 | 13 | ||
| 7 | MQTL-HD15 | RM214-RM7183 | 50.66 | 0.3 | 12.78-14.95 | 5 | 5 | 5 | 97 | ||
| 7 | MQTL-HD16 | RM432-RM7087 | 65.58 | 0.3 | 18.95-19.35 | 4 | 4 | 4 | 29 | ||
| 7 | MQTL-HD17 | C50171S-RM478 | 88.85 | 4.48 | 24.62-25.94 | 2 | 2 | 2 | 158 | ||
| 7 | MQTL-HD18 | S11279-C924 | 116.89 | 0.05 | 29.01-29.21 | 6 | 4 | 5 | 31 | ||
| 8 | MQTL-HD19 | E60560S-RZ562 | 51.31 | 1.95 | 4.17-5.42 | 5 | 4 | 4 | 112 | ||
| 8 | MQTL-HD20 | RM3181-RM7027 | 65.87 | 9.82 | 7.55-15.84 | 2 | 2 | 2 | 439 | ||
| 8 | MQTL-HD21 | RM8264-RM4668 | 84.77 | 1.18 | 19.83-20.53 | 4 | 4 | 4 | 59 | ||
| 10 | MQTL-HD22 | RM496-RM590 | 68.87 | 2 | 22.43-23.04 | 5 | 4 | 4 | 82 | ||
| 11 | MQTL-HD23 | S20162S-RM6894 | 36.24 | 3.59 | 5.37-5.91 | 4 | 4 | 4 | 60 | ||
| PH | 1 | MQTL-PH1 | RM5359-RM6630 | 41.15 | 6.65 | 7.17-8.36 | 5 | 3 | 3 | 152 | |
| 1 | MQTL-PH2 | C1905-E3004S | 72.04 | 5.86 | 12.64-15.16 | 2 | 2 | 2 | 184 | ||
| 1 | MQTL-PH3 | R2374-RM3475 | 107.61 | 2.84 | 25.06-26.04 | 2 | 2 | 2 | 99 | ||
| 1 | MQTL-PH4 | RM5461-V176 | 115.3 | 1.4 | 26.90-27.11 | 3 | 2 | 2 | 25 | ||
| 1 | MQTL-PH5 | C1459-RM3411 | 129.19 | 2.12 | 30.53-31.31 | 5 | 5 | 5 | 117 | ||
| 1 | MQTL-PH6 | RM8278-RM6618 | 146.15 | 0.07 | 36.62-37.01 | 4 | 3 | 3 | 36 | ||
| 1 | MQTL-PH7 | RM3442-RM8235 | 150.9 | 3.2 | 38.20-38.43 | 2 | 2 | 2 | 40 | ||
| 1 | MQTL-PH8 | RM8049-E60152S | 176.16 | 6.28 | 42.07-42.68 | 2 | 2 | 2 | 95 | [29] | |
| 2 | MQTL-PH9 | RM6853-RM452 | 44.24 | 5.59 | 8.95-9.56 | 2 | 2 | 2 | 39 | ||
| 2 | MQTL-PH10 | S13984-RM599 | 107.09 | 5.32 | 25.62-27.10 | 3 | 3 | 3 | 186 | ||
| 3 | MQTL-PH11 | RM6013-R2247 | 9.16 | 3.62 | 1.66-2.48 | 2 | 2 | 2 | 125 | ||
| 3 | MQTL-PH12 | RM7249-RM6080 | 61.25 | 2.77 | 12.90-13.93 | 4 | 4 | 4 | 82 | ||
| 3 | MQTL-PH13 | C831-S851 | 147.69 | 0.65 | 32.92-33.03 | 8 | 7 | 7 | 25 | ||
| 4 | MQTL-PH14 | S10983-RM6314 | 36.41 | 1.18 | 16.77-18.44 | 4 | 2 | 2 | 82 | ||
| 4 | MQTL-PH15 | C2043-RM3839 | 67.33 | 11.14 | 20.56-23.90 | 2 | 2 | 2 | 428 | [29] | |
| 4 | MQTL-PH16 | G379B-RZ879B | 108.46 | 4.29 | 30.63-33.12 | 2 | 2 | 2 | 359 | ||
| 5 | MQTL-PH17 | R1436-RZ649 | 72.97 | 4.71 | 18.25-19.54 | 3 | 3 | 3 | 127 | [29] | |
| 5 | MQTL-PH18 | RM3476-R3802S | 101.7 | 2.48 | 23.84-24.60 | 3 | 2 | 2 | 107 | ||
| 6 | MQTL-PH19 | RM5371-RM6782 | 98.23 | 0.64 | 25.82-26.04 | 5 | 4 | 4 | 26 | ||
| 7 | MQTL-PH20 | RM214-RM7183 | 50.65 | 0.3 | 12.78-14.95 | 3 | 2 | 2 | 97 | ||
| 7 | MQTL-PH21 | RM1135-RM5405 | 60.21 | 4.05 | 16.93-18.58 | 2 | 2 | 2 | 120 | ||
| 7 | MQTL-PH22 | RM3555-RM5720 | 107.11 | 1.89 | 27.89-28.66 | 3 | 3 | 3 | 123 | ||
| 8 | MQTL-PH23 | E20920S-C1107 | 60.6 | 5.56 | 6.03-8.68 | 7 | 5 | 6 | 164 | ||
| 8 | MQTL-PH24 | RM7356-RM210 | 92.21 | 1.7 | 21.28-22.47 | 2 | 2 | 2 | 101 | [29] | |
| 9 | MQTL-PH25 | RM1189-RM7048 | 103.29 | 3.16 | 16.27-16.93 | 4 | 3 | 3 | 80 | ||
| 10 | MQTL-PH26 | RM3311-RM8201 | 22.39 | 6.64 | 10.62-13.76 | 2 | 2 | 2 | 204 | [29] | |
| 10 | MQTL-PH27 | RM5304-S11014 | 45.45 | 8.06 | 16.34-17.98 | 3 | 3 | 3 | 164 | ||
| 12 | MQTL-PH28 | C11001SA-R10289S | 82.7 | 7.6 | 22.45-23.06 | 2 | 2 | 2 | 60 | ||
| YLD | 1 | MQTL-YLD1 | RG246-T96 | 21.31 | 8.24 | 3.50-4.44 | 2 | 2 | 2 | 122 | [28] |
| 1 | MQTL-YLD2 | C1905-C45 | 71.67 | 5.43 | 12.64-14.79 | 3 | 3 | 3 | 154 | [28] | |
| 1 | MQTL-YLD3 | RM5919-RM3475 | 106.72 | 6.72 | 24.73-26.04 | 3 | 3 | 3 | 146 | [28] | |
| 1 | MQTL-YLD4 | RM7414-RM3336 | 120.29 | 5.52 | 27.17-28.61 | 2 | 2 | 2 | 192 | ||
| 1 | MQTL-YLD5 | RM8061-RM6950 | 139.01 | 0.03 | 34.12-34.50 | 6 | 5 | 5 | 44 | ||
| 2 | MQTL-YLD6 | RM7413-RM8254 | 69.29 | 11.41 | 18.45-19.74 | 2 | 2 | 2 | 132 | [28, 29] | |
| 2 | MQTL-YLD7 | RM6933-RM3857 | 128.89 | 8.94 | 29.30-31.84 | 5 | 3 | 3 | 264 | [29] | |
| 3 | MQTL-YLD8 | S13802-C2184A | 44.79 | 3.92 | 9.24-10.39 | 2 | 2 | 2 | 183 | ||
| 3 | MQTL-YLD9 | C1186-G144 | 68.71 | 2.3 | 14.55-15.33 | 2 | 2 | 2 | 71 | [28] | |
| 3 | MQTL-YLD10 | RM5864-RZ403 | 90.64 | 3 | 22.39-23.08 | 3 | 3 | 3 | 49 | [28, 29] | |
| 3 | MQTL-YLD11 | S10209-S11669 | 127.52 | 3.48 | 27.82-29.55 | 3 | 3 | 3 | 205 | ||
| 4 | MQTL-YLD12 | E30341S-RM471 | 32.96 | 8.12 | 16.28-18.82 | 2 | 2 | 2 | 152 | ||
| 4 | MQTL-YLD13 | RM3337-RM3839 | 69.02 | 7.93 | 21.73-23.90 | 2 | 2 | 2 | 310 | [29] | |
| 6 | MQTL-YLD14 | E4392S-RM439 | 109.26 | 4.78 | 27.37-29.62 | 3 | 3 | 3 | 275 | [29] | |
| 7 | MQTL-YLD15 | RM432-RM2966 | 66.59 | 4.89 | 18.95-19.73 | 3 | 3 | 3 | 65 | [28] | |
| 8 | MQTL-YLD16 | E31128S-E2623S | 70.14 | 5.57 | 11.58-17.51 | 3 | 3 | 3 | 258 | ||
| 8 | MQTL-YLD17 | G1073A-RG1 | 89.53 | 4.71 | 20.66-21.64 | 2 | 2 | 2 | 93 | ||
| 9 | MQTL-YLD18 | C397-S1824 | 85.91 | 4.14 | 12.28-13.63 | 2 | 2 | 2 | 98 | [29] | |
| 11 | MQTL-YLD19 | S10207-R120 | 59.93 | 8.03 | 9.06-14.95 | 3 | 3 | 3 | 247 | [28, 29] | |
| TN | 1 | MQTL-TN1 | RM522-C52458 | 31.76 | 6.52 | 5.24-6.58 | 3 | 2 | 2 | 158 | |
| 1 | MQTL-TN2 | RM3614-S10712 | 127.12 | 2.46 | 29.82-31.36 | 3 | 3 | 3 | 247 | ||
| 2 | MQTL-TN3 | C41-RM6617 | 98.74 | 1.17 | 24.52-24.76 | 4 | 4 | 4 | 28 | ||
| 3 | MQTL-TN4 | RM1022-C68 | 39.95 | 5.93 | 7.23-9.31 | 5 | 5 | 5 | 257 | ||
| 3 | MQTL-TN5 | C60318S- RM6425 | 87.26 | 12.69 | 16.78-23.82 | 2 | 2 | 2 | 475 | [29] | |
| 4 | MQTL-TN6 | S733-R738 | 90.92 | 5.95 | 27.86-28.90 | 2 | 2 | 2 | 119 | ||
| 6 | MQTL-TN7 | RM253-RG213 | 27.32 | 2.97 | 5.42-6.28 | 2 | 2 | 2 | 100 | ||
| 7 | MQTL-TN8 | RM432-RM2966 | 66.38 | 4.44 | 18.95-19.73 | 3 | 2 | 2 | 65 | ||
| 8 | MQTL-TN9 | RM5767-RM1578 | 84.18 | 10.44 | 18.81-20.97 | 3 | 3 | 3 | 182 | ||
| 9 | MQTL-TN10 | RM6543-C11503S | 115.41 | 11.29 | 17.75-19.88 | 2 | 2 | 2 | 317 |
YLD Yield, GW Grain Weight, PH Plant Height, HD Heading Date, TN Tiller Number, Chr chromosome
aThe rice MQTLs with reference indicates that this MQTL was also reported in the previous studies