Table 5.
Barley GWAS SNP-based association with rice MQTLs
| Trait | Rice MQTLs | Rice chr. no. (rice gene ID)a | Barley chr. no. (The rice orthologous gene ID) | SNP BOPA marker name corresponding to the barley gene (genomic position in bp) | Barley gene annotation | Barley GWAS reference |
|---|---|---|---|---|---|---|
| GW | MQTL-GW4 | 1(Os01g0837300) | 2H(HORVU2Hr1G019180) | 11_0578 (49988534) | UDP-glucuronic acid decarboxylase 1 | [172] |
| GW | MQTL-GW4 | 1(Os01g0840200) | 3H(HORVU3Hr1G086480) | 11_1113 (617339425) | HSP20-like chaperones superfamily protein | [172] |
| GW | MQTL-GW20 | 5(Os05g0419800) | 1H(HORVU1Hr1G064020) | 11_0004 (458109745) | GDSL esterase/lipase | [172] |
| GW | MQTL-GW24 | 7(Os07g0479300) | 2H(HORVU2Hr1G109380) | 11_0489 (716480871) | Carboxypeptidase Y | [173] |
| HD | MQTL-HD4 | 2(Os02g0779200) | 6H(HORVU6Hr1G081850) | 11_0701 (546608851) | Subtilisin-like protease | [172] |
aThe rice gene ID located at the corresponding MQTL interval with a barley orthologous gene containing a SNP with significant signal in GWAS analysis.