Table 2.
List of phytotoxin genes differentially regulated by (p) ppGpp in PstDC3000 and PssB728a
| Locus tag | Description | (p)ppGpp0PstDC3000 /PstDC3000 | (p)ppGpp0PssB728a /PssB728a |
|---|---|---|---|
| DC3000 | |||
| Phytotoxin | |||
| Coronatine | |||
| PSPTO_4704 | DNA-binding response regulator CorR | − 2.59 | / |
| PSPTO_4705 | sensor histidine kinase CorS | − 1.81 | / |
| Coronamic acid | |||
| PSPTO_4710 | coronamic acid synthetase CmaB | − 2.02 | / |
| PSPTO_4711 | coronamic acid synthetase CmaC | −1.53 | / |
| PSPTO_4712 | coronamic acid synthetase, CmaT | −1.68 | / |
| PSPTO_4714 | CmaU protein | −1.15 | / |
| B728a Syringomycin | |||
| PSYR_2607 | regulatory protein SyrF | / | −2.16 |
| PSYR_2608 | amino acid adenylation SyrE | / | −1.81 |
| PSYR_2609 | Alpha/beta hydrolase fold SyrC | / | −1.34 |
| PSYR_2611 | amino acid adenylation SyrB1 | / | −1.23 |
| PSYR_2612 | SyrP protein | / | −2.97 |
| PSYR_2613 | cyclic peptide transporter SyrD | / | −2.03 |
DEGs were differentially expressed genes in the (p)ppGpp0PstDC3000 and (p)ppGpp0PssB728a with p-value < 0.05 between the WT and the ppGpp0 mutants. ‘/’ represents that gene is not present