Table 3.
List of T6SS genes differentially regulated by (p) ppGpp in PstDC3000 and PssB728a
| Locus tag | Description | (p)ppGpp0PstDC3000 /PstDC3000 | (p)ppGpp0PssB728a /PssB728a |
|---|---|---|---|
| DC3000 | |||
| PSPTO_2539 | secreted protein Hcp-1 | −1.37 | / |
| PSPTO_2550 | hypothetical protein PSPTO_2550 | −1.83 | / |
| PSPTO_2553 | hypothetical protein PSPTO_2553 | −1.38 | / |
| PSPTO_4385 | Rhs element Vgr protein | −1.26 | / |
| PSPTO_5415 | Rhs element Vgr protein | −1.79 | / |
| PSPTO_5416 | serine/threonine protein kinase | −1.63 | / |
| PSPTO_5417 | serine/threonine phosphoprotein phosphatase | −2.81 | / |
| PSPTO_5418 | hypothetical protein PSPTO_5418 | −2.85 | / |
| PSPTO_5419 | hypothetical protein PSPTO_5419 | −2.85 | / |
| PSPTO_5420 | hypothetical protein PSPTO_5420 | −2.48 | / |
| PSPTO_5421 | lipoprotein | −2.84 | / |
| PSPTO_5422 | FHA domain-containing protein | −2.25 | / |
| PSPTO_5423 | hypothetical protein PSPTO_5423 | −2.01 | / |
| PSPTO_5424 | sigma-54 dependent transcriptional regulator | −1.67 | / |
| PSPTO_5425 | ClpB protein | −1.82 | / |
| PSPTO_5426 | hypothetical protein PSPTO_5426 | −1.96 | / |
| PSPTO_5427 | hypothetical protein PSPTO_5427 | −2.16 | / |
| PSPTO_5430 | hypothetical protein PSPTO_5430 | −1.75 | / |
| PSPTO_5435 | secreted protein Hcp-2 | −1.29 | / |
| PSPTO_5436 | Rhs element Vgr protein | −2.59 | / |
| PSPTO_5437 | hypothetical protein PSPTO_5437 | −2.91 | / |
| PSPTO_5438 | Rhs family protein | −1.77 | / |
| B728a | |||
| PSYR_1935 | hypothetical protein PSYR_1935 | / | −1.04 |
| PSYR_2632 | virulence protein SrfB | / | −3.45 |
| PSYR_2633 | hypothetical protein PSYR_2633 | / | −1.76 |
| PSYR_4955 | hypothetical protein PSYR_4955 | / | −1.57 |
| PSYR_4956 | hypothetical protein PSYR_4956 | / | −2.04 |
| PSYR_4957 | hypothetical protein PSYR_4957 | / | −2.66 |
| PSYR_4958 | ATPase AAA | / | −3.3 |
| PSYR_4959 | hypothetical protein PSYR_4959 | / | −3.23 |
| PSYR_4960 | hypothetical protein PSYR_4960 | / | −3.61 |
| PSYR_4961 | hypothetical protein PSYR_4961 | / | −4.21 |
| PSYR_4962 | hypothetical protein PSYR_4962 | / | −3.88 |
| PSYR_4963 | hypothetical protein PSYR_4963 | / | −3.12 |
| PSYR_4964 | OmpA/MotB protein | / | −2.83 |
| PSYR_4965 | hypothetical protein PSYR_4965 | / | −4.22 |
| PSYR_4966 | ImpA-like protein | / | −3.72 |
| PSYR_4967 | hypothetical protein PSYR_4967 | / | −2.8 |
| PSYR_4974 | Rhs element Vgr protein | / | −1.91 |
| PSYR_4983 | Rhs element Vgr protein | / | −2.54 |
DEGs were differentially expressed genes in the (p)ppGpp0PstDC3000 and (p)ppGpp0PssB728a with p-value < 0.05 between the WT and the ppGpp0 mutants. ‘/’ represents that gene is not present or not significantly regulated