Skip to main content
. 2020 Apr 3;11:243. doi: 10.3389/fgene.2020.00243

TABLE 3.

Information on significant SNPs associated with ADG, ADFI, and RFI.

Trait SNPs Chr. Position Allele MAF Bate (SE) HS2 −log10(P-value) Candidate or nearest genes Annotation
ADG 6:5354190 6 5354190 T/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs731666382 6 5363742 T/C 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs731606971 6 5366469 G/C 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs733679573 6 5366491 T/C 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs315729276 6 5366673 G/T 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs732899645 6 5367289 T/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5367311 6 5367311 T/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs315794025 6 5367445 G/T 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs739465741 6 5368822 G/C 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs731318403 6 5368918 A/T 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5376152 6 5376152 T/A 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5382202 6 5382202 T/C 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs731882620 6 5386041 G/T 0.009 −7.32 (1.39) 0.96 6.74 IPMK Intergenic
ADG 6:5386085 6 5386085 A/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5388772 6 5388772 C/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs736396454 6 5389064 A/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5389116 6 5389116 A/G 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG 6:5389139 6 5389139 G/A 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs732888314 6 5389223 C/T 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADG rs741516185 6 5389362 G/A 0.008 −8.1 (1.44) 1.04 7.53 IPMK Intergenic
ADFI rs15997392 25 1147989 A/G 0.248 −5.42 (1.01) 10.96 6.9 COPA Intron
RFI rs313664593 2 1.39E + 08 A/G 0.014 −10.5 (1.96) 3.04 6.93 MTSS1 Intron
RFI rs313288641 14 4767015 G/A 0.107 −4.41 (0.85) 3.72 6.61 FLCN
COPS3		 5 prime UTR
Upstream
RFI rs314690911 14 4779635 A/G 0.142 −4.04 (0.75) 3.98 6.96 COPS3
NT5M		 Upstream
Upstream
RFI rs741733192 14 4782376 G/A 0.144 −3.98 (0.75) 3.91 6.82 COPS3
NT5M		 Upstream
Upstream
RFI rs314351418 14 4782740 G/A 0.144 −3.98 (0.75) 3.91 6.82 COPS3
NT5M		 Upstream
Upstream
RFI rs317155749 27 1212264 G/A 0.460 2.86 (0.54) 4.06 6.85 GTSF1 Intron
RFI rs735238610 27 1220239 A/G 0.462 2.86 (0.54) 4.07 6.81 GTSF1 Intron

ADG, average daily gain; ADFI, average daily feed intake; RFI, residual feed intake; HS2, the additive genomic variance explained by a SNP.