Table 1. Genomic details of NAC TFs of plants.
Sl. No | Name of the species | No. of double domain NAC TF | No. of Novel chimeric NAC TFs | Total No. of NAC TFs | No. of duplicated genes | No. of paralogous genes |
---|---|---|---|---|---|---|
Monocots | ||||||
1 | Aegilops tauschii | 4 | 117 | 114 | 114 | |
2 | Brachypodium distachyon | 2 | 1 | 137 | 135 | 135 |
3 | Brachypodium stacei | 1 | 1 | 128 | 127 | 127 |
4 | Hordeum vulgare | 76 | 76 | 76 | ||
5 | Leersia perrieri | 5 | 2 | 163 | 162 | 162 |
6 | Oropetium thomaeum | 1 | 118 | 103 | 103 | |
7 | Oryza barthii | 4 | 134 | 138 | 138 | |
8 | Oryza brachyantha | 1 | 1 | 118 | 110 | 110 |
9 | Oryza glaberrima | 1 | 116 | 110 | 110 | |
10 | Oryza glumipatula | 2 | 140 | 139 | 139 | |
11 | Oryza longistaminata | 1 | 6 | 125 | 98 | 98 |
12 | Oryza meridionalis | 2 | 2 | 127 | 123 | 123 |
13 | Oryza nivara | 4 | 1 | 146 | 130 | 130 |
14 | Oryza punctata | 6 | 1 | 135 | 133 | 133 |
15 | Oryza rufipogon | 4 | 3 | 136 | 129 | 129 |
16 | Oryza sativa subsp. indica | 1 | 3 | 157 | 156 | 156 |
17 | Oryza sativa subsp. japonica | 1 | 139 | 138 | 138 | |
18 | Panicum hallii | 3 | 6 | 139 | 126 | 126 |
19 | Panicum virgatum | 9 | 6 | 310 | 309 | 309 |
20 | Phoenix dactylifera | 3 | 1 | 124 | 123 | 123 |
21 | Phyllostachys edulis | 125 | 124 | 124 | ||
22 | Phyllostachys heterocycla | 2 | 2 | 125 | 124 | 124 |
23 | Saccharum officinarum | 44 | 33 | 33 | ||
24 | Setaria italica | 4 | 139 | 134 | 134 | |
25 | Setaria viridis | 1 | 135 | 118 | 118 | |
26 | Sorghum bicolor | 1 | 141 | 134 | 134 | |
27 | Spirodela polyrhiza | 55 | 48 | 48 | ||
28 | Triticum aestivum | 2 | 2 | 263 | 209 | 209 |
29 | Triticum urartu | 1 | 103 | 74 | 74 | |
30 | Zea mays | 1 | 1 | 130 | 119 | 119 |
31 | Zostera marina | 1 | 62 | 55 | 55 | |
32 | Zoysia japonica | 4 | 176 | 160 | 160 | |
33 | Zoysia matrella | 1 | 3 | 313 | 230 | 230 |
34 | Zoysia pacifica | 1 | 2 | 205 | 183 | 183 |
Dicots | ||||||
35 | Actinidia chinensis | 1 | 5 | 167 | 166 | 166 |
36 | Aethionema arabicum | 3 | 85 | 84 | 84 | |
37 | Amaranthus hypochondriacus | 1 | 44 | 37 | 37 | |
38 | Amborella trichopoda | 46 | 45 | 45 | ||
39 | Ananas comosus | 1 | 73 | 72 | 72 | |
40 | Aquilegia coerulea | 80 | 79 | 79 | ||
41 | Arabidopsis halleri | 2 | 94 | 93 | 93 | |
42 | Arabidopsis lyrata | 4 | 1 | 122 | 121 | 121 |
43 | Arabidopsis thaliana | 5 | 113 | 112 | 112 | |
44 | Arabis alpina | 1 | 82 | 81 | 81 | |
45 | Arachis duranensis | 82 | 81 | 81 | ||
46 | Arachis hypogaea | 162 | 161 | 161 | ||
47 | Arachis ipaensis | 83 | 81 | 81 | ||
48 | Artemisia annua | 28 | 27 | 27 | ||
49 | Azadirachta indica | 183 | 182 | 182 | ||
50 | Beta vulgaris | 53 | 52 | 52 | ||
51 | Boechera stricta | 2 | 123 | 122 | 122 | |
52 | Brassica napus | 10 | 7 | 410 | 409 | 409 |
53 | Brassica oleracea | 4 | 3 | 271 | 270 | 270 |
54 | Brassica rapa | 4 | 2 | 256 | 255 | 255 |
55 | Cajanus cajan | 96 | 95 | 95 | ||
56 | Camelina sativa | 17 | 3 | 341 | 330 | 330 |
57 | Cannabis sativa | 58 | 57 | 57 | ||
58 | Capsella grandiflora | 2 | 95 | 94 | 94 | |
59 | Capsella rubella | 5 | 119 | 118 | 118 | |
60 | Capsicum annum | 96 | 95 | 95 | ||
61 | Carica papaya | 82 | 81 | 81 | ||
62 | Castanea mollissima | 4 | 91 | 78 | 78 | |
63 | Catharanthus roseus | 2 | 121 | 120 | 120 | |
64 | Chenopodium quinoa | 1 | 96 | 95 | 95 | |
65 | Cicer arietinum | 96 | 95 | 95 | ||
66 | Citrullus lanatus | 80 | 79 | 79 | ||
67 | Citrus clementina | 129 | 128 | 128 | ||
68 | Citrus sinensis | 2 | 145 | 143 | 143 | |
69 | Coffea canephora | 63 | 62 | 62 | ||
70 | Cucumis melo | 92 | 91 | 91 | ||
71 | Cuccumis sativus | 83 | 80 | 80 | ||
72 | Daucus carota | 2 | 96 | 95 | 95 | |
73 | Dianthus caryophyllus | 79 | 77 | 77 | ||
74 | Dichanthelium oligosanthes | 8 | 2 | 131 | 100 | 100 |
75 | Dorcoceras hygrometricum | 2 | 83 | 76 | 76 | |
76 | Elaeis guineensis | 2 | 1 | 170 | 167 | 167 |
77 | Eragrostis tef | 8 | 3 | 172 | 165 | 165 |
78 | Eucalyptus camaldulensis | 200 | 124 | 124 | ||
79 | Eucalyptus grandis | 164 | 150 | 150 | ||
80 | Eutrema salsugineum | 2 | 122 | 104 | 104 | |
81 | Fragaria vesca | 3 | 6 | 127 | 123 | 123 |
82 | Fragaria x ananassa | 2 | 1 | 98 | 97 | 97 |
83 | Genlisea aurea | 1 | 45 | 42 | 42 | |
84 | Glycine max | 180 | 175 | 175 | ||
85 | Glycine soja | 1 | 173 | 166 | 166 | |
86 | Gossypium arboreum | 150 | 146 | 146 | ||
87 | Gossypium hirsutum | 1 | 2 | 306 | 296 | 296 |
88 | Gossypium raimondii | 153 | 145 | 145 | ||
89 | Helianthus annuus | 21 | 20 | 20 | ||
90 | Humulus lupulus | 74 | 68 | 68 | ||
91 | Ipomoea trifida | 1 | 2 | 131 | 123 | 123 |
92 | Jatropha curcas | 1 | 97 | 93 | 93 | |
93 | Juglans regia | 3 | 92 | 81 | 81 | |
94 | Kalanchoe laxiflora | 166 | 165 | 165 | ||
95 | Kalanchoe marnieriana | 179 | 178 | 178 | ||
96 | Lactuca sativa | 54 | 52 | 52 | ||
97 | Linum usitatissimum | 1 | 1 | 191 | 187 | 187 |
98 | Lotus japonicus | 2 | 98 | 92 | 92 | |
99 | Malus domestica | 2 | 9 | 253 | 232 | 232 |
100 | Manihot esculenta | 130 | 128 | 128 | ||
101 | Medicago truncatula | 1 | 97 | 90 | 90 | |
102 | Mimulus guttatus | 114 | 113 | 113 | ||
103 | Morus notabilis | 2 | 78 | 77 | 77 | |
104 | Musa acuminata | 1 | 1 | 170 | 164 | 164 |
105 | Nelumbo nucifera | 88 | 79 | 79 | ||
106 | Nicotiana benthamiana | 2 | 2 | 227 | 185 | 185 |
107 | Nicotiana sylvestris | 156 | 149 | 149 | ||
108 | Nicotiana tabacum | 280 | 279 | 279 | ||
109 | Nicotiana tomentosiformis | 172 | 162 | 162 | ||
110 | Ocimum tenuiflorum | 2 | 1 | 110 | 82 | 82 |
111 | Petunia axillaris | 3 | 131 | 108 | 108 | |
112 | Petunia inflata | 157 | 147 | 147 | ||
113 | Phaseolus vulgaris | 85 | 84 | 84 | ||
114 | Populus euphratica | 2 | 3 | 155 | 149 | 149 |
115 | Populus trichocarpa | 1 | 169 | 149 | 149 | |
116 | Prunus mume | 1 | 129 | 128 | 128 | |
117 | Prunus persica | 1 | 1 | 115 | 114 | 114 |
118 | Pyrus bretschneideri | 1 | 5 | 185 | 183 | 183 |
119 | Raphanus raphanistrum | 4 | 3 | 207 | 206 | 206 |
120 | Raphanus sativus | 5 | 1 | 217 | 197 | 197 |
121 | Ricinus communis | 95 | 87 | 87 | ||
122 | Salix purpurea | 175 | 152 | 152 | ||
123 | Salvia miltiorrhiza | 1 | 2 | 87 | 81 | 81 |
124 | Sesamum indicum | 105 | 104 | 104 | ||
125 | Sisymbrium irio | 2 | 2 | 121 | 118 | 118 |
126 | Solanum lycopersicum | 101 | 94 | 94 | ||
127 | Solanum melongena | 1 | 3 | 95 | 85 | 85 |
128 | Solanum pennellii | 2 | 102 | 98 | 98 | |
129 | Solanum pimpinellifolium | 97 | 90 | 90 | ||
130 | Solanum tuberosum | 1 | 129 | 115 | 115 | |
131 | Spinacia oleracea | 45 | 43 | 43 | ||
132 | Tarenaya hassleriana | 1 | 178 | 177 | 177 | |
133 | Thellungiella halophila | 2 | 122 | 121 | 121 | |
134 | Thellungiella parvula | 1 | 92 | 91 | 91 | |
135 | Theobroma cacao | 132 | 131 | 131 | ||
136 | Trifolium pratense | 2 | 2 | 97 | 76 | 76 |
137 | Utricularia gibba | 1 | 74 | 73 | 73 | |
138 | Vigna angularis | 98 | 97 | 97 | ||
139 | Vigna radiata | 2 | 82 | 81 | 81 | |
140 | Vigna unguiculata | 20 | 19 | 19 | ||
141 | Ziziphus jujuba | 101 | 100 | 100 | ||
142 | Vitis vinifera | 1 | 70 | 79 | 79 | |
Gymnosperms | ||||||
143 | Picea abies | 1 | 100 | 73 | 73 | |
144 | Picea glauca | 32 | 31 | 31 | ||
145 | Picea sitchensis | 16 | 15 | 15 | ||
146 | Pinus taeda | 31 | 27 | 27 | ||
147 | Pseudotsuga menziesii | 5 | 3 | 196 | 195 | 195 |
Pteridophyte | ||||||
148 | Selaginella moellendorffii | 22 | 21 | 21 | ||
Bryophytes | ||||||
149 | Marchantia polymorpha | 9 | ||||
150 | Physcomitrella patens | 33 | 32 | 32 | ||
151 | Sphagnum fallax | 26 | 25 | 25 | ||
Algae | ||||||
152 | Bathycoccus prasinos | 0 | 0 | 0 | ||
153 | Chlamydomonas reinhardtii | 0 | 0 | 0 | ||
154 | Chlorella sp. NC64A | 0 | 0 | 0 | ||
155 | Coccomyxa sp. | 0 | 0 | 0 | ||
156 | Dunaliella salina | 0 | 0 | 0 | ||
157 | Klebsormidium flaccidum | 3 | 0 | 0 | ||
158 | Micromonas pusilla | 0 | 0 | 0 | ||
159 | Ostreococcus lucimarinus | 0 | 0 | 0 | ||
160 | Volvox carteri | 0 | 0 | 0 |