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. 2020 Apr 10;15(4):e0231425. doi: 10.1371/journal.pone.0231425

Table 4. Codon usage of NAC TFs in plants.

Codons Codon present in No. of species Codon absent in No. of species Average abundance of codons Highest no. of codons Name of the species with highest no. of codons
AAA (K) 126 20 4.77 9.9 Glycine soja
AAG (K) 146 0 10.75 24.2 Sphagnum fallax
AAC (N) 144 2 3.66 14.2 Beta vulgaris
AAU (N) 127 19 9.25 20.5 Spinacia oleracea
ACA (T) 139 7 2.33 15.2 Citrus sinensis
ACC (T) 137 9 2.4 17 Amborella trichopoda
ACG (T) 20 126 5.91 13 Dorcoceras hygrometricum
ACU (T) 146 0 7.42 16.6 Sesamum indicum
AGA (R) 146 0 10.92 24.3 Klebsormidium flaccidum
AGG (R) 146 0 4.12 18.8 Amborella trichopoda
CGA (R) 19 127 5.22 13.9 Linum usitatissimum
CGC (R) 19 127 2.47 6 Linum usitatissimum
CGG (R) 19 127 3.93 8.6 Citrullus lanatus
CGU (R) 19 127 2.06 4.7 Linum usitatissimum
AGC (S) 143 3 3.54 24.2 Beta vulgaris
AGU (S) 144 2 1.83 5.2 Dorcoceras hygrometricum
UCC (S) 141 5 4.51 12.3 Aegilops tauschii
UCG (S) 20 126 2.64 6.4 Dorcoceras hygrometricum
UCU (S) 146 0 4.65 30.5 Humulus lupulus
UCA (S) 139 7 5.09 15.1 Morus notabilis
AUA (I) 124 22 4.80 15.3 Sphagnum fallax
AUC (I) 146 0 5.10 16.7 Sphagnum fallax
AUU (I) 126 20 8.71 15.9 Spinacia oleracea
AUG (M) 146 0 7.81 22.8 Sphagnum fallax
CAA (Q) 146 0 5.31 15.4 Fragaria vesca
CAG (Q) 20 126 13.3 22.6 Linum usitatissimum
CAC (H) 20 126 6.64 10.9 Beta vulgaris
CAU (H) 144 2 4.45 9.7 Setaria viridis
CCA (P) 20 126 11.09 16.3 Dorcoceras hygrometricum
CCC (P) 20 126 14.18 19.2 Amborella trichopoda
CCG (P) 20 126 5.10 11.1 Dorcoceras hygrometricum
CCU (P) 146 0 8.00 24.7 Klebsormidium flaccidum
CUA (L) 143 3 5.83 28.3 Sphagnum fallax
CUC (L) 123 23 5.74 23.6 Sphagnum fallax
CUG (L) 142 4 5.87 43.9 Sphagnum fallax
CUU (L) 145 1 5.94 32.6 Sphagnum fallax
UUG (L) 125 21 5.94 24.4 Sphagnum fallax
UAA (L) 124 22 5.37 17.2 Sphagnum fallax
GAA (E) 146 0 4.62 27 Klebsormidium flaccidum
GAG (E) 145 1 5.54 18.1 Sphagnum fallax
GAC (D) 145 1 5.05 14.9 Beta vulgaris
GAU (D) 144 2 5.86 21.7 Spinacia oleracea
GCA (A) 135 11 5.49 18.5 Citrus sinensis
GCC (A) 130 16 5.05 15 Amborella trichopoda
GCG (A) 20 126 4.64 11.2 Dorcoceras hygrometricum
GCU (A) 146 0 4.65 31.1 Setaria viridis
GGA (G) 146 0 4.63 27.5 Setaria viridis
GGC (G) 141 5 5.41 17.1 Amborella trichopoda
GGG (G) 145 1 2.7 6.7 Elaeis guineensis
GGU (G) 145 1 2.40 5.9 Elaeis guineensis
GUA (V) 140 6 1.46 3.5 Sphagnum fallax
GUC (V) 123 23 0.93 2 Morus notabilis
GUG (V) 142 4 4.35 11.8 Beta vulgaris
GUU (V) 143 3 5.38 16.6 Klebsormidium flaccidum
UAC (Y) 138 8 3.84 10.1 Morus notabilis
UAU (Y) 126 20 6.23 14.8 Solanum melongena
UGG (W) 147 0 3.89 14.5 Vitis vinifera
UGC (C) 143 3 5.14 15.6 Oropetium thomaeum
UGU (C) 145 1 3.9 9.6 Zoysia matrella
UUC (F) 146 0 4.60 25.4 Picea glauca
UUU (F) 126 20 10.67 19.2 Sphagnum fallax