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. Author manuscript; available in PMC: 2020 Apr 10.
Published in final edited form as: Cell Rep. 2020 Feb 18;30(7):2065–2074.e4. doi: 10.1016/j.celrep.2020.01.073

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER

Critical Commercial Assays

QIAGEN miRCURY RNA isolation kit QIAGEN 76743
QIAGEN QIAamp DNA Micro Kit QIAGEN 56304
Human 450K Infinium Methylation BeadChip Illumina WG-314–1003
SMARTer Stranded Total RNA-seq PICO v2 kit Clontech/Takara 634414

Deposited Data

reference cell molecular profiles GEO see GSE138115 for sample Identifiers
Glioma tumor molecular profiles TCGA see GSE138115 for sample Identifiers
DNA methylation profiles of HBMVECs This Paper see GSE138115
RNA-seq profiles of HBMVECs This Paper see GSE138115

Experimental Models: Cell Lines

GBM8 primary GBM cells Dr. Hiroaki Wakimoto NA
Primary Human Brain Microvascular Endothelial Cells Cell Systems ACBRI-376

Oligonucleotides

Anti-miR-9: Cy5-TCATACAGCTAGATAACCAAAG This Paper NA

Software and Algorithms

exceRpt [v4.6.3] small RNA-seq pipeline Rob Kitchen https://github.com/rkitchen/exceRptgenboree.org
EDec Onuchic et al., 2016 https://github.com/BRL-BCM/EDec
RnBeads Assenov et al., 2014 rnbeads.org
GSEA Broad Institute http://software.broadinstitute.org/gsea/index.jsp

Other

EGM-2 MV Microvascular Endothelial SingleQuots Kit Lonza CC-4147
EBM-2 Endothelial Cell Growth Basal Medium-2 Lonza CC-3156