KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Critical Commercial Assays | ||
QIAGEN miRCURY RNA isolation kit | QIAGEN | 76743 |
QIAGEN QIAamp DNA Micro Kit | QIAGEN | 56304 |
Human 450K Infinium Methylation BeadChip | Illumina | WG-314–1003 |
SMARTer Stranded Total RNA-seq PICO v2 kit | Clontech/Takara | 634414 |
Deposited Data | ||
reference cell molecular profiles | GEO | see GSE138115 for sample Identifiers |
Glioma tumor molecular profiles | TCGA | see GSE138115 for sample Identifiers |
DNA methylation profiles of HBMVECs | This Paper | see GSE138115 |
RNA-seq profiles of HBMVECs | This Paper | see GSE138115 |
Experimental Models: Cell Lines | ||
GBM8 primary GBM cells | Dr. Hiroaki Wakimoto | NA |
Primary Human Brain Microvascular Endothelial Cells | Cell Systems | ACBRI-376 |
Oligonucleotides | ||
Anti-miR-9: Cy5-TCATACAGCTAGATAACCAAAG | This Paper | NA |
Software and Algorithms | ||
exceRpt [v4.6.3] small RNA-seq pipeline | Rob Kitchen | https://github.com/rkitchen/exceRptgenboree.org |
EDec | Onuchic et al., 2016 | https://github.com/BRL-BCM/EDec |
RnBeads | Assenov et al., 2014 | rnbeads.org |
GSEA | Broad Institute | http://software.broadinstitute.org/gsea/index.jsp |
Other | ||
EGM-2 MV Microvascular Endothelial SingleQuots Kit | Lonza | CC-4147 |
EBM-2 Endothelial Cell Growth Basal Medium-2 | Lonza | CC-3156 |