Table 2.
Gene | Protein change | Allele Freq. |
Chr. | Start Pos. | End pos. | Ref | Var | SIFT prediction |
Polyphen-2 prediction |
|
---|---|---|---|---|---|---|---|---|---|---|
Patient 1 | MAP2K2 (MEK2) | P128L | 0.10 | 19 | 4110574 | 4110574 | G | A | Damaging | Probably damaging |
AR | A646D | 0.99 | X | 66931295 | 66931295 | C | A | Tolerated | Benign | |
TCF3 | N347T | 0.49 | 19 | 1621020 | 1621020 | T | G | Tolerated | Probably damaging | |
ARID2 | T1193A | 0.46 | 12 | 46245483 | 46245483 | A | G | Tolerated | Benign | |
Patient 2 | KMT2B (MLL4) | E373del | 0.40 | 19 | 36211355 | 36211357 | AAG | A | - | - |
MPEG1 | L221I | 0.50 | 11 | 58979678 | 58979678 | G | T | Tolerated | Benign | |
RUNX1 | G60C | 0.48 | 21 | 36259232 | 36259232 | C | A | Damaging | Probably damaging | |
Patient 3 | EGFR | H145R | 0.46 | 7 | 55214308 | 55214308 | A | G | Tolerated | Benign |
EPHA3 | S662T | 0.52 | 3 | 89462392 | 89462392 | T | G | Tolerated | Benign | |
RARA | G248D | 0.53 | 17 | 38508695 | 38508695 | G | A | Damaging | Probably damaging | |
SOX9 | T316A | 0.44 | 17 | 70119944 | 70119944 | A | A | Tolerated | Benign | |
SESN1 | H47R | 0.48 | 6 | 109415137 | 109415137 | T | C | Tolerated | Benign | |
SETD2 | G1649E | 0.46 | 3 | 47143017 | 47143017 | C | T | Damaging | Probably damaging | |
ANKRD11 | A2284V | 0.47 | 16 | 89346099 | 89346099 | G | A | (not scored) | Benign | |
TET3 | V1137I | 0.49 | 2 | 74327729 | 74327729 | G | A | Tolerated | Benign | |
ZFHX3 | Q3203_Q3204del | 0.28 | 16 | 72822564 | 72822569 | TGCTGC | - | - | - |