| Databases |
| BAliBASE222
|
http://bips.u-strasbg.fr/en/Products/Databases/BAliBASE/ |
| CATH20
|
http://www.biochem.ucl.ac.uk/bsm/cath/ |
| DBALI215
|
http://www.salilab.org/dbali |
| GENBANK14
|
http://www.ncbi.nlm.nih.gov/Genbank/ |
| GENECENSUS223
|
http://bioinfo.mbb.yale.edu/genome/ |
| MODBASE32
|
http://www.salilab.org/modbase/ |
| PDB12
|
http://www.rcsb.org/pdb/ |
| PFAM17
|
http://www.sanger.ac.uk/Software/Pfam/ |
| SCOP19
|
http://scop.mrc-lmb.cam.ac.uk/scop/ |
| SwissProt224
|
http://www.expasy.org |
| Uniprot13
|
http://www.uniprot.org |
| Template search |
| 123D225
|
http://123d.ncifcrf.gov/ |
| 3D pssm71
|
http://www.sbg.bio.ic.ac.uk/∼3dpssm |
| BLAST36
|
http://www.ncbi.nlm.nih.gov/BLAST/ |
| DALI33
|
http://www2.ebi.ac.uk/dali/ |
| FastA226
|
http://www.ebi.ac.uk/fasta33/ |
| FFAS0360
|
http://ffas.ljcrf.edu/ |
| PREDICTPROTEIN227
|
http://cubic.bioc.columbia.edu/predictprotein/ |
| PROSPECTOR67
|
http://www.bioinformatics.buffalo.edu/current_buffalo/skolnick/prospector.html |
| PSIPRED228
|
http://bioinf.cs.ucl.ac.uk/psipred/ |
| RAPTOR68
|
http://genome.math.uwaterloo.ca/∼raptor/ |
| SUPERFAMILY229
|
http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/ |
| SAM-T0269
|
http://www.soe.ucsc.edu/research/compbio/HMM-apps/ |
| SP353
|
http://phyyz4.med.buffalo.edu/ |
| SPARKS2230
|
http://phyyz4.med.buffalo.edu/ |
| THREADER231
|
http://bioinf.cs.ucl.ac.uk/threader/threader.html |
| UCLA-DOE FoLD SERVER232
|
http://fold.doe-mbi.ucla.edu |
| Target–template alignment |
| BCM SERVERF233
|
http://searchlauncher.bcm.tmc.edu |
| BLOCK MAKERF234
|
http://blocks.fhcrc.org/ |
| CLUSTALW235
|
http://www2.ebi.ac.uk/clustalw/ |
| COMPASS57
|
ftp://iole.swmed.edu/pub/compass/ |
| FUGUE63
|
http://www-cryst.bioc.cam.ac.uk/fugue |
| MULTALIN236
|
http://prodes.toulouse.inra.fr/multalin/ |
| MUSCLE237
|
http://www.drive5.com/muscle |
| SALIGN213
|
http://www.salilab.org/modeler |
| SEA238
|
http://ffas.ljcrf.edu/sea/ |
| TCOFFEE239
|
http://www.ch.embnet.org/software/TCoffee.html |
| USC SEQALN240
|
http://www-hto.usc.edu/software/seqaln |
| Modeling |
| 3d-jigsaw86
|
http://www.bmm.icnet.uk/servers/3djigsaw/ |
| COMPOSER83
|
http://www.tripos.com |
| CONGEN121
|
http://www.congenomics.com/ |
| ICM123
|
http://www.molsoft.com |
| JACKAL241
|
http://trantor.bioc.columbia.edu/programs/jackal/ |
| DISCOVERY STUDIO |
http://www.accelrys.com |
| MODELLER96
|
http://www.salilab.org/modeller/ |
| SYBYL |
http://www.tripos.com |
| SCWRL147
|
http://dunbrack.fccc.edu/SCWRL3.php |
| SNPWEB213
|
http://salilab.org/snpweb |
| SWISS-MODEL87
|
http://www.expasy.org/swissmod |
| WHAT IF242
|
http://www.cmbi.kun.nl/whatif/ |
| Prediction of model errors |
| ANOLEA164
|
http://protein.bio.puc.cl/cardex/servers/ |
| AQUA243
|
http://urchin.bmrb.wisc.edu/∼jurgen/aqua/ |
| BIOTECH244
|
http://biotech.embl-heidelberg.de:8400 |
| ERRAT245
|
http://www.doe-mbi.ucla.edu/Services/ERRAT/ |
| PROCHECK167
|
http://www.biochem.ucl.ac.uk/∼roman/procheck/procheck.html |
| ProsaII162
|
http://www.came.sbg.ac.at |
| PROVE246
|
http://www.ucmb.ulb.ac.be/UCMB/PROVE |
| SQUID247
|
http://www.ysbl.york.ac.uk/∼oldfield/squid/ |
| VERIFY3D160
|
http://www.doe-mbi.ucla.edu/Services/Verify_3D/ |
| WHATCHECK168
|
http://www.cmbi.kun.nl/gv/whatcheck/ |
| Methods evaluation |
| CAFASP171
|
http://cafasp.bioinfo.pl |
| CASP248
|
http://predictioncenter.llnl.gov |
| CASA249
|
http://capb.dbi.udel.edu/casa |
| EVA174
|
http://cubic.bioc.columbia.edu/eva/ |
| LiveBench172
|
http://bioinfo.pl/LiveBench/ |
