Table 2.
Overrepresented transcription factor families
| TFF | Leaf | Root | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FeT1 | FeT1Rec | FeT1T2 | FeT2 | PiT1 | PiT1Rec | PiT1T2 | PiT2 | FeT1 | FeT1Rec | FeT1T2 | FeT2 | PiT1 | PiT1Rec | PiT1T2 | PiT2 | |
| AP2-EREBP (343) | 44 | 85 | 136 | 99 | 99 | |||||||||||
| AUX-IAA-ARF (117) | 11 | 34 | 42 | 36 | ||||||||||||
| E2F/DP (12) | 7 | |||||||||||||||
| GRAS (113) | 35 | 47 | ||||||||||||||
| Homeodomain/HOMEOBOX (274) | 37 | 71 | 68 | |||||||||||||
| NAC (187) | 37 | 37 | 62 | 61 | 71 | 66 | 59 | |||||||||
| TPR (279) | 47 | |||||||||||||||
| WRKY (174) | 35 | 51 | 62 | |||||||||||||
| ZIM (24) | 10 | 10 | 9 | 17 | ||||||||||||
The number of transcription factors (TFs) within each transcription factor family (TFF) differentially expressed at each timepoint in roots and leaves was compared to the total number of TFs in that TFF in the genome (provided in parentheses after the TFF name). A Bonferroni correction was applied to correct for overtesting (corrected P value < 0.05). These analyses identified a total of 254 unique DE TFs belonging to the overrepresented TFFs