Extended Data Table 1 |.
Cryo-EM data collection, refinement and validation statistics of MthK WT Ca2+ bound states 1–3, MthK WT Ca2+ bound closed state, and RCK states 1–2.
MthK Ca2+ state 1 (EMDB-20662) (PDB 6U6S) |
MthK Ca2+ state2 (EMDB-20664) (PDB 6U6E) |
MthK Ca2+ state3 (EMDB-20665) (PDB 6U6H) |
MthK Ca2+ closed (EMDB-20653) (PDB 6U5R) |
RCK state 1 (EMDB-20652) (PDB 6U5P) |
RCK state2 (EMDB-20650) (PDB 6U5N) |
|
---|---|---|---|---|---|---|
Data collection and processing | ||||||
Magnification | 22500 | 22500 | 22500 | 22500 | 22500 | 22500 |
Voltage (kV) | 300 | 300 | 300 | 300 | 300 | 300 |
Electron exposure (e-/Å2) | 52 | 52 | 52 | 52 | 52 | 52 |
Defocus range (urn) | −1.6 to-2.4 | −1.6 to-2.4 | −1.6 to-2.4 | −1.6 to−2.4 | −1.6 to−2.4 | −1.6 to−2.4 |
Pixel size (Å) | 1.096 | 1.096 | 1.096 | 1.096 | 1.096 | 1.096 |
Symmetry imposed | Cl | Cl | Cl | C4 | C2 | C2 |
Initial particle images | 1,426,050 | 1,426,050 | 1,426,050 | 1,426,050 | 1,426,050 | 1,426,050 |
Final particle images | 29,448 | 14,483 | 15,144 | 22,677 | 150,542 | 113,103 |
Map resolution (Å) | 4.5 | 6.3 | 5 | 3.6 | 3.3 | 3.2 |
FSC threshold | 0.143 | 0.143 | 0.143 | 0.143 | 0.143 | 0.143 |
Map resolution range (Å) | 4.5‒6.5 | 6‒7.5 | 4.5‒6.5 | 3.5‒5.5 | 2.8‒3.4 | 2.6‒3.2 |
Refinement | * | * | * | |||
Initial model used (PDB code) | 3LDC | 3LDC | 3LDC | 2FY8 | 4L73 | 4L73 |
Model resolution (Å) | 6.2 | 6.7 | 6.4 | 3.7 | 3.3 | 3.2 |
FSC threshold | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
Model resolution range (Å) | 4.5−6.5 | 6−7.5 | 4.5−6.5 | 3.5−5.5 | 2.8−3.4 | 2.6−3.2 |
Map sharpening B factor (A2) | −96 | −186 | −146 | −124 | −102 | −97 |
Model composition | ||||||
Non-hydrogen | 10489 | 10422 | 10352 | 16516 | 13308 | 13262 |
atoms | 2133 | 2118 | 2104 | 2156 | 1776 | 1776 |
Protein residues | 0 | 0 | 0 | 8 | 24 | 24 |
Ligands B factors (Å2) | 40 | 44 | 44 | 61 | 48 | 34 |
Protein | ||||||
Ligand | - | - | - | 120 | 48 | 34 |
R.m.s. deviations | 0.006 | 0.006 | 0.005 | 0.011 | 0.006 | 0.006 |
Bond lengths (Å) | ||||||
Bond angles (°) | 0.895 | 0.932 | 0.762 | 0.948 | 0.733 | 0.743 |
Validation | ||||||
MolProbity score | 0.79 | 0.62 | 0.57 | 1.68 | 1.5 | 1.39 |
Clashscore | 0.46 | 0.07 | 0 | 5.12 | 4.07 | 2.73 |
Poor rotamers (%) | 0 | 0 | 0 | 0 | 0 | 0 |
Ramachandran plot | ||||||
Favored (%) | 97.3 | 97.6 | 97.7 | 93.9 | 95.6 | 95.2 |
Allowed (%) | 2.6 | 2.5 | 2.3 | 6.1 | 4.4 | 4.8 |
Disallowed (%) | 0 | 0 | 0 | 0 | 0 | 0 |
indicates a poly-alanine model with side chains truncated and ligands removed.