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. Author manuscript; available in PMC: 2020 Oct 1.
Published in final edited form as: Nature. 2020 Mar 18;580(7802):288–293. doi: 10.1038/s41586-020-2116-0

Extended Data Table 1 |.

Cryo-EM data collection, refinement and validation statistics of MthK WT Ca2+ bound states 1–3, MthK WT Ca2+ bound closed state, and RCK states 1–2.

MthK Ca2+ state 1
(EMDB-20662) (PDB 6U6S)
MthK Ca2+ state2
(EMDB-20664) (PDB 6U6E)
MthK Ca2+ state3
(EMDB-20665) (PDB 6U6H)
MthK Ca2+ closed
(EMDB-20653) (PDB 6U5R)
RCK state 1
(EMDB-20652) (PDB 6U5P)
RCK state2
(EMDB-20650) (PDB 6U5N)
Data collection and processing
Magnification 22500 22500 22500 22500 22500 22500
Voltage (kV) 300 300 300 300 300 300
Electron exposure (e-/Å2) 52 52 52 52 52 52
Defocus range (urn) −1.6 to-2.4 −1.6 to-2.4 −1.6 to-2.4 −1.6 to−2.4 −1.6 to−2.4 −1.6 to−2.4
Pixel size (Å) 1.096 1.096 1.096 1.096 1.096 1.096
Symmetry imposed Cl Cl Cl C4 C2 C2
Initial particle images 1,426,050 1,426,050 1,426,050 1,426,050 1,426,050 1,426,050
Final particle images 29,448 14,483 15,144 22,677 150,542 113,103
Map resolution (Å) 4.5 6.3 5 3.6 3.3 3.2
 FSC threshold 0.143 0.143 0.143 0.143 0.143 0.143
Map resolution range (Å) 4.5‒6.5 6‒7.5 4.5‒6.5 3.5‒5.5 2.8‒3.4 2.6‒3.2
Refinement * * *
Initial model used (PDB code) 3LDC 3LDC 3LDC 2FY8 4L73 4L73
Model resolution (Å) 6.2 6.7 6.4 3.7 3.3 3.2
 FSC threshold 0.5 0.5 0.5 0.5 0.5 0.5
Model resolution range (Å) 4.5−6.5 6−7.5 4.5−6.5 3.5−5.5 2.8−3.4 2.6−3.2
Map sharpening B factor (A2) −96 −186 −146 −124 −102 −97
Model composition
 Non-hydrogen 10489 10422 10352 16516 13308 13262
atoms 2133 2118 2104 2156 1776 1776
 Protein residues 0 0 0 8 24 24
 Ligands B factors (Å2) 40 44 44 61 48 34
 Protein
 Ligand - - - 120 48 34
R.m.s. deviations 0.006 0.006 0.005 0.011 0.006 0.006
 Bond lengths (Å)
 Bond angles (°) 0.895 0.932 0.762 0.948 0.733 0.743
Validation
 MolProbity score 0.79 0.62 0.57 1.68 1.5 1.39
 Clashscore 0.46 0.07 0 5.12 4.07 2.73
 Poor rotamers (%) 0 0 0 0 0 0
Ramachandran plot
 Favored (%) 97.3 97.6 97.7 93.9 95.6 95.2
 Allowed (%) 2.6 2.5 2.3 6.1 4.4 4.8
 Disallowed (%) 0 0 0 0 0 0
*

indicates a poly-alanine model with side chains truncated and ligands removed.