Extended Data Table 2 |.
Cryo-EM data collection, refinement and validation statistics of MthK WT Ca2+ bound states 1–3, MthK WT Ca2+ bound closed state, and RCK states 1–2.
| MthK EDTA (EMDB-20663 (PDB 6U6D) |
MthK Ca2+ Δ2–17 state 1 (EMDB-20930) (PDB 6UX7) |
MthK Ca2+ Δ2–17 state2 (EMDB-20931) (PDB 6UXA) |
MthK Ca2+ Δ2–17 state3 (EMDB-20932) (PDB 6UXB) |
Δ2–17 Ca2+ RCK state 1 (EMDB-20925) (PDB 6UWN) |
Δ2–17 Ca2+ RCK state 1 (EMDB-20929) (PDB 6UX4) |
|
|---|---|---|---|---|---|---|
| Data collection and processing | ||||||
| Magnification | 130000 | 22500 | 22500 | 22500 | 22500 | 22500 |
| Voltage (kV) | 300 | 300 | 300 | 300 | 300 | 300 |
| Electron exposure (e-/Å2) | 49.32 | 57 | 57 | 57 | 57 | 57 |
| Defocus range (urn) | −0.5 to −3 | −1.4 to−2.4 | −1.4 to−2.4 | −1.4 to−2.4 | −1.4 to−2.4 | −1.4 to−2.4 |
| Pixel size (Å) | 1.05878 | 1.07 | 1.07 | 1.07 | 1.07 | 1.07 |
| Symmetry imposed | C4 | Cl | Cl | Cl | C2 | C2 |
| Initial particle images | 360,273 | 1,356,600 | 1,356,600 | 1,356,600 | 1,356,600 | 1,356,600 |
| Final particle images | 80,904 | 40,536 | 96,834 | 68,286 | 175,149 | 273,492 |
| Map resolution (Å) | 3.6 | 6.7 | 4.5 | 4.9 | 3.5 | 3.5 |
| FSC threshold | 0.143 | 0.143 | 0.143 | 0.143 | 0.143 | 0.143 |
| Map resolution range (Å) | 2.8–3.8 | 5–7 | 5–7 | 5–7 | 3.2–3.6 | 3.2–3.6 |
| Refinement | * | * | * | |||
| Initial model used (PDB code) | 2FY8 | 3LDC | 3LDC | 3LDC | 4L73 | 4L73 |
| Model resolution (Å) | 3.7 | 7 | 6.5 | 6.3 | 3.5 | 3.4 |
| FSC threshold | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 | 0.5 |
| Model resolution range (Å) | 2.8–3.8 | 5–7 | 5–7 | 5–7 | 3.2–3.6 | 3.2–3.6 |
| Map sharpening B | −110 | −100 | −100 | −100 | −159 | −174 |
| factor (Å2) | ||||||
| Model composition | ||||||
| Non-hydrogen | 16770 | 10344 | 10344 | 10344 | 13258 | 13258 |
| atoms | 2156 | 2104 | 2104 | 2104 | 1776 | 1776 |
| Protein residues | 2 | 0 | 0 | 0 | 24 | 24 |
| Ligands | 50 | 45 | 45 | 45 | 72 | 58 |
| B factors (Å2) | ||||||
| Protein | ||||||
| Ligand | 50 | - | - | - | 47 | 33 |
| R.m.s. deviations | ||||||
| Bond lengths (Å) | 0.002 | 0.005 | 0.005 | 0.005 | 0.007 | 0.011 |
| Bond angles (°) | 0.487 | 0.774 | 0.775 | 0.775 | 0.711 | 0.816 |
| Validation | ||||||
| MolProbity score | 1.58 | 0.75 | 0.75 | 0.75 | 1.35 | 1.4 |
| Clashscore | 6.53 | 0 | 0 | 0 | 3.49 | 3.37 |
| Poor rotamers | 0.0 | 0 | 0 | 0 | 0.15 | 0.29 |
| (%) | ||||||
| Ramachandran plot | ||||||
| Favored (%) | 96.6 | 96.2 | 96.2 | 96.2 | 96.7 | 96 |
| Allowed (%) | 3.4 | 3.8 | 3.8 | 3.8 | 3.3 | 4 |
| Disallowed (%) | 0.0 | 0 | 0 | 0 | 0 | 0 |
indicates a poly-alanine model with side chains truncated and ligands removed.