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. 2020 Mar 6;9(3):335. doi: 10.3390/plants9030335

Figure 3.

Figure 3

Comparisons of differentially regulated genes from the different RNA-seq analyses. (A) The A9up set of 4755 genes consistently upregulated in the 35S:A9 and DS10:A9 RNA-seq experiments. (B) Comparison of the A9up genes with genes upregulated in the DS10:A4a RNA-seq. (C) Comparison of the A9up genes with genes downregulated in the DS10:A4a RNA-seq. The considered log2fold upregulation (+0.6) or downregulation (−0.5) level is indicated for each comparison. See the text in the Results section for further explanation and interpretation of the different gene subsets obtained from the RNA-seq comparisons summarized here and listed in Tables S1 and S3–S6. Examples for the different gene subsets mentioned in the text are included in Table S2.