Table 2. Resolved MGEs and associated antibiotic resistance and metal interaction gene contents.
| MGE* | Length (kb) | % GC | Replicons† | MOB Family‡ | Antibiotic resistance Genes§ | Metal interaction Genes¶ |
|---|---|---|---|---|---|---|
| cEC00609 | 39.1 | 52.6 | None | None | aac(3)-IIa, aac(6')-Ib-cr, blaCTX-M-1, blaOXA-1, catB3, tet(A) | None |
| pCB00017_2 | 196.8 | 51.7 | FIB, FIIK | MOB-F | aac(6')-Ib-cr, aph(3'')-Ib, aph(6)-Id, blaCTX-M-15, blaOXA-1, blaTEM-1B, catB3, qnrB1, tet(A), sul2 | copD operon, pcoE, silE, silP, ars operon |
| pCB00028_2 | 383.1 | 47.5 | HI2, HI2A | MOB-H | aac(3)-IIa, aac(6')-Ib-cr, aadA1, aph(3'')-Ib, aph(6)-Id, blaCTX-M-15, blaOXA-1, baTEM-1B, catA1, catB3, dfrA14, sul2, tet(A) | pcoE, merR, merB |
| pEC00668_2 | 145.4 | 55.9 | FIA, FII | MOB-F | aac(6)-Id, aph(3'')-Ib, dfrA14, blaTEM-1B, mph(A), sul2 | efeU, merA, merC, merP, merR, merT |
| pEC00690_2 | 106.8 | 54.7 | FIA, FII | MOB-F | aac(6')-Ibcr, blaOXA-1, catB3, tet(A) | efeU |
| pKLP00149_2 | 165.2 | 52.9 | FIIY | MOB-F | aac(6')-Ib, aac(6')-Ib-cr, aadA1, aph(3'')-Ib, aph(6)-Id, blaKPC-3, blaOXA-9, blaSHV-182, blaTEM-1A, dfrA14, sul2 | csoR |
| pKLP00155_6 | 9.5 | 54.9 | ColRNAI | MOB-C | None | None |
| pKLP00161_2 | 236.5 | 55.1 | FIB, FIIK | MOB-F | aac(6')-Ib-cr, aph(3'')-Ib, aph(6)-Id, blaCTX-M-15, blaOXA-1, blaTEM-1B, dfrA14, qnrB1, sul2, tet(A) | copD operon, pcoC, pcoE, silE, silP, ars operon |
| pKLP00177_3 | 170.8 | 52.0 | FIB | MOB-F | aac(3)-IIa, aac(6')-Ib-cr, aph(3'')-Ib, aph(6)-Id, blaCTX-M-15, blaOXA-1, blaTEM-1B, catB3, dfrA14, qnrB1, sul2, tet(A) | copD operon, pcoC, pcoE, silE, silP, ars operon |
| pKLP00182_3 | 15.8 | 51.2 | A/C | MOB-H | aac(6')-Ib-cr, blaOXA-1, catB3, dfrA14, tet(A) | None |
| pKLP00215_4 | 113.6 | 53.9 | FIB, FIIK | MOB-F | blaKPC-2, blaOXA-9, blaTEM-1A | merB, merR |
| pKLP00218_2 | 164.7 | 54.9 | FIB, FIIK | MOB-F | aph(3'')-Ib, aph(6)-Id, blaCTX-M-15, blaTEM-1B, dfrA14, sul2 | copD operon, pcoC, pcoE, silE, silP, ars operon |
| pKLP00221_2 | 242.3 | 53.2 | ColRNAI, FIB, FII | MOB-C, MOB-F | aac(6')-Ib, aada2, aph(3')−1a, blaKPC-2, blaOXA-9, blaTEM-1A, catA1, dfrA12, mph(A), sul1 | copD operon, pcoC, pcoE, silE, silP, ars operon |
*MGE names include location (c = chromosome, p=plasmid), name of the reference isolate sequenced, and assembly contig number (_2, _3, _4, _6).
†Replicons were identified by querying Plasmid MLST and PlasmidFinder databases.
‡MOB families were assigned with MOBscan.
§Antibiotic resistance genes were identified by querying the ResFinder database.
¶Metal interaction genes were identified by examining annotations assigned by Prokka.