Table 3.
Selected nucleocapsid protein epitopes.
| Epitope | Virus | % Identity | Length | Alignment length | Position | e-value |
|---|---|---|---|---|---|---|
| KHWPQIAQ FAPSASAFF |
SARS-CoV | 100 | 17 | 17 | 300–316 | 2.46e-16 |
| Bat CoV | 100 | 17 | 299–315 | 2.46e-16 | ||
| Dromedarius CoV | 78.571 | 14 | 293–306 | 7.55e-09 | ||
| Camel CoV | 78.571 | 14 | 293–306 | 7.55e-09 | ||
| MERS-CoV | 78.571 | 14 | 293–306 | 7.55e-09 | ||
| H-Enteric CoV | 52.941 | 17 | 308–324 | 7.05e-04 | ||
| Canine CoV | 52.941 | 17 | 308–324 | 7.05e-04 | ||
| Bovine CoV | 52.941 | 17 | 308–324 | 8.30e-05 | ||
| Pangolin CoV | 100 | 16 | 290–305 | 2.72e-16 | ||
| AQFAPSA SAFFGMSR |
SARS-CoV | 100 | 15 | 15 | 306–320 | 3.34e-13 |
| Bat CoV | 100 | 15 | 305–319 | 3.34e-13 | ||
| Dromedarius CoV | 71.429 | 14 | 297–310 | 2.75e-06 | ||
| Camel CoV | 71.429 | 14 | 297–310 | 2.75e-06 | ||
| MERS-CoV | 71.429 | 14 | 297–310 | 2.75e-06 | ||
| H-Enteric CoV | 63.636 | 11 | 314–324 | 0.001 | ||
| Canine CoV | 63.636 | 11 | 314–324 | 0.001 | ||
| Avian CoV | 58.333 | 12 | 276–286 | 13 | ||
| Bovine CoV | 63.636 | 11 | 314–324 | 1.73e-04 | ||
| Pangolin CoV | 100 | 15 | 295–309 | 3.33e-14 | ||
| PKGFYAEG SRGGSQASSR |
SARS-CoV | 100 | 18 | 18 | 169–186 | 2.32e-15 |
| Bat CoV | 100 | 18 | 168–185 | 2.32e-15 | ||
| Dromedarius CoV | 61.111 | 18 | 157–174 | 1.02e-04 | ||
| Camel CoV | 61.111 | 18 | 157–174 | 1.02e-04 | ||
| MERS-CoV | 61.111 | 18 | 157–174 | 1.02e-04 | ||
| H-Enteric CoV | 48 | 25 | 183–207 | 2.88e-04 | ||
| Canine CoV | 48 | 25 | 183–207 | 2.88e-04 | ||
| Avian CoV | 100 | 5 | 183–187 | 0.15 | ||
| Bovine CoV | 48 | 25 | 183–207 | 3.40e-05 | ||
| Pangolin CoV | 100 | 18 | 168–185 | 2.30e-16 | ||
| QFAPSASAF FGMSRIGM |
SARS-CoV | 100 | 17 | 17 | 307–323 | 6.91e-16 |
| Bat CoV | 100 | 17 | 306–322 | 6.91e-16 | ||
| Dromedarius CoV | 81.818 | 11 | 300–310 | 1.54e-05 | ||
| Camel CoV | 81.818 | 11 | 300–310 | 1.54e-05 | ||
| MERS-CoV | 81.818 | 11 | 300–310 | 1.54e-05 | ||
| H-Enteric CoV | 50 | 16 | 309–324 | 0.004 | ||
| Canine CoV | 50 | 16 | 309–324 | 0.004 | ||
| Avian CoV | 53.846 | 13 | 276–287 | 7.8 | ||
| Bovine CoV | 50 | 16 | 309–324 | 4.73e-04 | ||
| Pangolin CoV | 100 | 17 | 296–312 | 6.88e-17 | ||
| QLPQGTTLPKGF YAEGSRGGSQ |
SARS-CoV | 100 | 22 | 22 | 161–182 | 7.79e-20 |
| Bat CoV | 100 | 22 | 160–181 | 7.79e-20 | ||
| H-Enteric CoV | 66.667 | 15 | 177–191 | 3.16e-05 | ||
| Canine CoV | 66.667 | 15 | 177–191 | 3.16e-05 | ||
| Dromedarius CoV | 61.111 | 18 | 153–170 | 4.88e-04 | ||
| Camel CoV | 61.111 | 18 | 153–170 | 4.88e-04 | ||
| MERS-CoV | 61.111 | 18 | 153–170 | 4.88e-04 | ||
| Avian CoV | 100 | 5 | 183–187 | 0.22 | ||
| Bovine CoV | 66.667 | 15 | 177–191 | 3.72e-06 | ||
| Pangolin CoV | 100 | 22 | 160–181 | 7.75e-21 | ||
| YNVTQAFGR RGPEQTQGNF |
SARS-CoV | 100 | 19 | 19 | 269–287 | 4.02e-18 |
| Bat CoV | 100 | 19 | 268–286 | 4.02e-18 | ||
| Dromedarius CoV | 63.158 | 19 | 260–278 | 1.86e-06 | ||
| Camel CoV | 63.158 | 19 | 260–278 | 1.86e-06 | ||
| MERS-CoV | 63.158 | 19 | 260–278 | 1.86e-06 | ||
| H-Enteric CoV | 58.824 | 17 | 282–295 | 3.32e-04 | ||
| Canine CoV | 58.824 | 17 | 282–295 | 3.32e-04 | ||
| Bovine CoV | 58.824 | 17 | 282–295 | 3.91e-05 | ||
| Pangolin CoV | 100 | 15 | 261–275 | 2.40e-14 |