Online Table 1.
Neuroblastoma cell lines profiled in this study.
| Histone ChIP-Seq | Transcription Factor | Other | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell Line | MYCN Status | H3K27Ac | H3K27me3 | H3K4me1 | H3K4me3 | MYCN | MYC | ATAC | |||||||||||||||||||||
| Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | Sequencing Facility | Sequencer | Read Length | PE or SE | ||
| COG-N-415 | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| COG-N-440 | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| COG-N-453 | non-amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| KELLY | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | CHOP | MiSeq | 50 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | CHOP | HiSeq. 2500 | 100 bp | PE |
| LA-N-5 | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| NB-1 | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| NB-1643 | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| NB-69 | non-amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Active Motif | NextSeq. 500 | 42 bp | PE |
| NB-LS | non-amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| NGP | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | Active Motif | NextSeq. 500 | 42 bp | PE |
| SK-N-AS | non-amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | Jefferson | NextSeq. 500 | 75 bp | SE | CHOP | HiSeq. 2500 | 100 bp | PE |
| SK-N-BE(2)-C | amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| SK-N-FI | non-amp | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | Jefferson | NextSeq. 500 | 75 bp | SE | NA | NA | NA | NA | NA | NA | NA | NA | CHOP | HiSeq. 2500 | 100 bp | PE |
| SK-N-SH | non-amp | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * |
*External data available from ENCODE.
Identification of which cell lines were used to perform ChIP-Seq and ATAC-Seq, along with their MYCN amplification status.