Online Table 3.
ChIP-Seq Quality Control Metrics.
| ChIP-seq samples | Total number of mapped reads | NSC | RSC | Quality Tag | FRiP |
|---|---|---|---|---|---|
| COGN415-H3K27Ac | 47176895 | 1.198422 | 1.272757 | 1 | 0.474845 |
| COGN415-H3K27me3 | 36536236 | 1.071534 | 1.158632 | 1 | 0.49757 |
| COGN415-H3K4me1 | 46916556 | 1.07441 | 1.234691 | 1 | 0.495989 |
| COGN415-H3K4me3 | 35108977 | 1.737172 | 1.165273 | 1 | 0.665681 |
| KELLY-H3K27Ac | 40396065 | 1.149861 | 1.251872 | 1 | 0.535178 |
| KELLY-H3K27me3 | 40796047 | 1.061208 | 0.928446 | 0 | 0.527917 |
| KELLY-H3K4me1 | 40245244 | 1.098321 | 1.204422 | 1 | 0.6152 |
| KELLY-H3K4me3 | 39466119 | 1.591399 | 1.190163 | 1 | 0.654777 |
| LAN5-H3K27Ac | 43885147 | 1.203236 | 1.20255 | 1 | 0.519087 |
| LAN5-H3K27me3 | 34543494 | 1.075239 | 0.97775 | 0 | 0.497408 |
| LAN5-H3K4me1 | 56164251 | 1.077862 | 1.15542 | 1 | 0.529717 |
| LAN5-H3K4me3 | 31858899 | 1.764651 | 1.176897 | 1 | 0.619316 |
| NB1643-H3K27Ac | 41742217 | 1.296535 | 1.200707 | 1 | 0.52952 |
| NB1643-H3K27me3 | 23005654 | 1.039613 | 0.595513 | 0 | 0.360867 |
| NB1643-H3K4me1 | 50897016 | 1.122099 | 1.183034 | 1 | 0.567832 |
| NB1643-H3K4me3 | 37634501 | 1.532691 | 1.205901 | 1 | 0.568343 |
| NB69-H3K27Ac | 53900803 | 1.167153 | 1.186056 | 1 | 0.38709 |
| NB69-H3K27me3 | 34409193 | 1.107075 | 0.980233 | 0 | 0.322941 |
| NB69-H3K4me1 | 42335848 | 1.123224 | 1.159933 | 1 | 0.568245 |
| NB69-H3K4me3 | 27850317 | 2.250138 | 1.150775 | 1 | 0.707439 |
| NBLS-H3K27Ac | 50890146 | 1.179172 | 1.215066 | 1 | 0.505567 |
| NBLS-H3K27me3 | 35015208 | 1.09364 | 1.030182 | 1 | 0.489031 |
| NBLS-H3K4me1 | 46236749 | 1.10292 | 1.169135 | 1 | 0.570663 |
| NBLS-H3K4me3 | 50235082 | 1.553831 | 1.101005 | 1 | 0.559603 |
| NGP-H3K27Ac | 38313036 | 1.361727 | 1.198959 | 1 | 0.568805 |
| NGP-H3K27me3 | 37472545 | 1.077646 | 1.057799 | 1 | 0.536769 |
| NGP-H3K4me1 | 48180227 | 1.103056 | 1.186526 | 1 | 0.565611 |
| NGP-H3K4me3 | 36776488 | 1.560065 | 1.190639 | 1 | 0.604321 |
| SKNAS-H3K27Ac | 44588659 | 1.193814 | 1.185694 | 1 | 0.51158 |
| SKNAS-H3K27me3 | 35294269 | 1.097313 | 1.054037 | 1 | 0.509914 |
| SKNAS-H3K4me1 | 44751199 | 1.080169 | 1.217051 | 1 | 0.529041 |
| SKNAS-H3K4me3 | 37205051 | 1.59864 | 1.152108 | 1 | 0.552572 |
| SKNBE2C-H3K27Ac | 41843000 | 1.321413 | 1.250426 | 1 | 0.519484 |
| SKNBE2C-H3K27me3 | 38128223 | 1.05271 | 1.088533 | 1 | 0.372794 |
| SKNBE2C-H3K4me1 | 40497385 | 1.085463 | 1.219962 | 1 | 0.43465 |
| SKNBE2C-H3K4me3 | 35566334 | 1.624385 | 1.192349 | 1 | 0.555207 |
| SKNFI-H3K27Ac | 29596790 | 1.256625 | 1.24649 | 1 | 0.51058 |
| SKNFI-H3K27me3 | 43286296 | 1.050568 | 0.964636 | 0 | 0.404905 |
| SKNFI-H3K4me1 | 47444355 | 1.087186 | 1.189153 | 1 | 0.431344 |
| SKNFI-H3K4me3 | 33682220 | 1.892165 | 1.176541 | 1 | 0.596417 |
| SKNSH-H3K27Ac | 1483696 | 1.784565 | 1.831717 | 2 | 0.298579 |
| COGN415-NMYC-20171205 | 29461253 | 1.147548 | 1.317602 | 1 | 0.335752 |
| KELLY-CMYC-20171205 | 19638904 | 1.092233 | 1.286621 | 1 | 0.112855 |
| KELLY-MYCN-20150914 | 22082714 | 1.504426 | 1.186748 | 1 | 0.439206 |
| LAN5-NMYC-20171205 | 29364683 | 1.242474 | 1.273926 | 1 | 0.460691 |
| NB1643-NMYC-20171205 | 22694640 | 1.238667 | 1.329251 | 1 | 0.440359 |
| NB69-CMYC-20171205 | 28528819 | 1.117398 | 1.233859 | 1 | 0.13737 |
| NB69-NMYC-20171205 | 18647527 | 1.049936 | 0.852352 | 0 | 0.007798 |
| SKNAS-CMYC-20171205 | 27536490 | 1.179348 | 1.250418 | 1 | 0.183257 |
| SKNSH-CMYC-20171205 | 8773023 | 1.331705 | 1.19801 | 1 | 0.157383 |
Total number of reads, FRiP score, RSC, and NSC per sample.