Online Table 4.
ATAC-seq IDR Analysis.
| Samples | IDR (Nt) | # Total Peaks | IDR (Np) | # Total Pseudo Rep Pool Peaks | Np/Nt (<2) | N1 | Rep1_Self_Pseudo Peaks | N2 | Rep2_Self_Pseudo Peaks | N1/N2 (<2) |
|---|---|---|---|---|---|---|---|---|---|---|
| COGN415 | 27051 | 55764 | 31677 | 66503.000 | 1.171010314 | 14704 | 35064 | 13931 | 31330.000 | 1.055487761 |
| COGN440 | 7218 | 22089 | 8932 | 26076.000 | 1.237461901 | 1906 | 9986 | 4824 | 17022.000 | 0.395107794 |
| COGN453 | 26805 | 49832 | 31053 | 56091.000 | 1.158477896 | 19455 | 39812 | 9630 | 25545.000 | 2.020249221 |
| KELLY | 10648 | 25971 | 12907 | 28929.000 | 1.212152517 | 7209 | 19757 | 4689 | 14466.000 | 1.537428023 |
| LAN5 | 30751 | 60243 | 46583 | 79014.000 | 1.514845046 | 14936 | 38632 | 34164 | 56074.000 | 0.437185341 |
| NB1643 | 25220 | 49715 | 27600 | 55257.000 | 1.094369548 | 9974 | 27819 | 14955 | 37296.000 | 0.666934136 |
| NB1 | 25180 | 43124 | 28711 | 47781.000 | 1.140230342 | 14999 | 29416 | 14301 | 28969.000 | 1.048807776 |
| NB69 | 46014 | 82061 | 51838 | 85805.000 | 1.126570174 | 32369 | 58267 | 43363 | 86770.000 | 0.746465881 |
| NBLS | 17371 | 35110 | 19221 | 39658.000 | 1.106499338 | 10644 | 27571 | 4995 | 17682.000 | 2.130930931 |
| NGP | 44934 | 73646 | 45296 | 74607.000 | 1.00805626 | 29873 | 58165 | 27529 | 51986.000 | 1.085146573 |
| SKNAS | 15621 | 35518 | 17270 | 37810.000 | 1.105563024 | 8003 | 24257 | 6290 | 21135.000 | 1.272337043 |
| SKNBE2C | 3395 | 13236 | 4088 | 15254.000 | 1.204123711 | 1105 | 5957 | 1640 | 6912.000 | 0.673780488 |
| SKNFI | 57416 | 77782 | 59856 | 81540.000 | 1.042496865 | 40617 | 59269 | 38239 | 58950.000 | 1.062187819 |
| SKNSH | 32737 | 52860 | 36584 | 58216.000 | 1.117512295 | 21463 | 39650 | 19730 | 38074.000 | 1.087835783 |
IDR calculations and ratios between true replicates (Nt), pooled pseudoreplicates (Np), self-pseudoreplicates 1 (N1), and self-pseudoreplicates 2 (N2).