Online Table 5.
Super-enhancer-associated transcription factor comparisons.
| ADRN SE | Cell Lines using ROSE | Cell Lines using LILY | Cell Lines using Both |
|---|---|---|---|
| ASCL1 | COG-N-415, SK-N-FI | COG-N-415, LA-N-5, NB-1643, SK-N-BE(2)C, SK-N-FI | COG-N-415, LA-N-5, NB-1643, SK-N-BE(2)C, SK-N-FI |
| DACH1 | SK-N-AS, SK-N-FI | SK-N-AS, SK-N-FI | |
| EYA1 | |||
| GATA2 | |||
| GATA3 | COG-N-415, KELLY, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI, SK-N-SH | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI |
| HAND1 | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI |
| HEY1 | |||
| ISL1 | SK-N-FI | SK-N-FI | |
| KLF13 | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI |
| KLF7 | NB-69, SK-N-AS, SK-N-BE(2)C | COG-N-415, LA-N-5, NB-69, NB-1643, NGP, SK-N-AS, SK-N-BE(2)C | COG-N-415, LA-N-5, NB-69, NB-1643, NGP, SK-N-AS, SK-N-BE(2)C |
| PBX3 | SK-N-FI | SK-N-FI | |
| PHOX2A | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI, SK-N-SH | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI |
| PHOX2B | COG-N-415, KELLY, LA-N-5, NB-LS, SK-N-AS, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-1643, NB-LS, NGP, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, NGP, SK-N-AS, SK-N-BE(2)C, SK-N-FI |
| SATB1 | COG-N-415, LA-N-5 | COG-N-415, LA-N-5 | |
| SIX3 | NGP, SK-N-BE(2)C | NGP, SK-N-BE(2)C | |
| SOX11 | NGP | LA-N-5 | LA-N-5, NGP |
| TFAP2B | COG-N-415, KELLY, LA-N-5, NB-69, NB-LS, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI | COG-N-415, KELLY, LA-N-5, NB-69, NB-1643, NB-LS, SK-N-BE(2)C, SK-N-FI |
| ZNF536 | LA-N-5, NB-69, NB-1643, NGP | LA-N-5, NB-69, NB-1643, NGP | LA-N-5, NB-69, NB-1643, NGP |
| MES SE | Cell Lines using ROSE | Cell Lines using LILY | Cell Lines using Both |
| AEBP1 | SK-N-SH | SK-N-SH | |
| CBFB | |||
| CREG1 | |||
| DCAF6 | |||
| EGR3 | |||
| ELK4 | |||
| ID1 | |||
| IFI16 | |||
| MAML2 | |||
| MEOX1 | |||
| MEOX2 | |||
| NOTCH2 | |||
| PRRX1 | SK-N-SH | SK-N-SH | SK-N-SH |
| SIX1 | SK-N-SH | SK-N-SH | SK-N-SH |
| SIX4 | |||
| SMAD3 | LA-N-5, SK-N-AS, SK-N-SH | LA-N-5, SK-N-AS, SK-N-SH | LA-N-5, SK-N-AS, SK-N-SH |
| SOX9 | |||
| WWTR1 | |||
| ZFP36L1 | |||
| ZNF217 | KELLY, SK-N-AS, SK-N-FI, SK-N-SH | KELLY, SK-N-AS, SK-N-FI, SK-N-SH |
Adrenergic and mesenchymal lineage-specific SEs defined by Gronigen, et. al. and the neuroblastoma cell lines listed per gene in which SEs were called.