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. 2020 Mar 12;9(3):208. doi: 10.3390/pathogens9030208

Figure 5.

Figure 5

Proportion of inherited polymorphism. Substitutions present at the consensus level across samples also present at the subconsensus level in the inoculum (≥ 0.5%) are defined as ancestral SNPs. The remaining nucleotide changes observed in sample consensuses (not detected in the inoculum) are defined as novel.