. 2020 Mar 24;11(2):e00385-20. doi: 10.1128/mBio.00385-20

TABLE 1.

Copy numbers of extrachromosomal prophages

Strain(phage)	Phage reads^a	Precise end reads^b	End- spanning reads^c	Total end reads	End- spanning reads: total end reads	Coverage		Phage/host coverage
Strain(phage)	Phage reads^a	Precise end reads^b	End- spanning reads^c	Total end reads	End- spanning reads: total end reads	Phage	mc²155	Raw	Corrected^d
mc²155(Alma)	59,386	41	46	87	0.53	167.5	18.5	9.1	4.80
mc²155(Et2Brutus)	32,465	11	35	46	0.76	92.8	19.2	4.8	3.69
mc²155(LadyBird)	27,265	11	19	30	0.63	77.0	19.1	4.0	2.55

Sequence reads mapping to the phage genome out of a total of ∼1 million per sample.

Sequence reads beginning at precisely the terminus of viral genomic DNA.

Sequence reads that span the predicted 5′ and 3′ ends of the genomes.

The ratio of phage/host genome coverage multiplied by the end-spanning reads:total end reads.