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. 2020 Mar 13;9(3):214. doi: 10.3390/pathogens9030214

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Neighbor-joining (NJ) phylograms of MsAPV1-AU and other members of the family Partitiviridae based on (a) RNA-dependent RNA polymerase (RdRP; dsRNA1) and (b) coat protein (CP; dsRNA2) amino acid sequences: Bootstrap values are shown as percentages of 1000 replications. The scale bar indicates the number of substitutions per site. Red clover powdery mildew-associated totivirus, RPaTV, was used as the outgroup. Virus names and GenBank accession numbers are listed in Table S7. The topologies from NJ and maximum likelihood (not shown) analyses were identical. Pairwise identities plots of (c) RdRP and (d) CP of partitiviruses aligned by MUSCLE and displayed by Sequence Demarcation Tool software: Virus names and GenBank accession numbers are listed in Table S7. Colored heat map of pairwise identities corresponds to the colors on the scale.