Table 2.
Homology between the deposited sequences and reference sequences in GenBank (T: Sample number tested by conventional assay; S: Sample number which allowed sequence recovery; AN: Accession number of the recovered sequence; L: recovered sequence length (bp); Id%: percentage of nucleotide identity between recovered and reference sequences).
| Biomark Id | Sequence Name | T | S | AN | L | Closest Homology | Id% | Reference |
|---|---|---|---|---|---|---|---|---|
| Rickettsia spp. | Rickettsia africae Tick208 | 30 | 14 | MK049851 | 248 | Rickettsia africae | 100 | AF123706.1 |
| Leishmania spp. | Leishmania martiniquensis Tick389 | 2 | 1 | MK049850 | 272 | Leishmania martiniquensis | 100 | AF303938.1 |
| Leishmania siamensis | 100 | GQ226033.1 | ||||||
| Borrelia spp. | Borrelia sp. Tick7 | 30 | 1 | MK049846 | 245 | Borrelia anserina | 90 | X75201.1 |
| Borrelia sp. Tick457 | 4 | MK049847 | 327 | Borrelia sp. BR | 100 | EF141022.1 | ||
| Borrelia sp. strain Mo063b-flaB | 100 | KY070335.1 | ||||||
| Borrelia theileri | 99 | KF569936.1 | ||||||
| Anaplasma spp. | Anaplasma sp. Tick314 | 2 | 2 | MK049845 | 245 | Candidatus Anaplasma boleense | 100 | KX987335.1 |
| Anaplasma marginale | Anaplasma sp. Tick283 | 2 | 2 | MK049844 | 244 | Anaplasma marginale | 100 | MH155593.1 |
| Anaplasma centrale | 100 | MF289482.1 | ||||||
| Anaplasma ovis | 100 | MG770440.1 | ||||||
| Anaplasma capra | 100 | MF000917.1 | ||||||
| Anaplasma phagocytophilum | 100 | DQ648489.1 | ||||||
| Ehrlichia spp. | Ehrlichia sp. Tick428 | 2 | 2 | MK049849 | 246 | Ehrlichia spp. | 100 | KY594915.1 |
| Ehrlichia canis | 99 | KY594915.1 | ||||||
| Ehrlichia ewingii | 99 | U96436.1 | ||||||
| Ehrlichia chaffeensis | 99 | NR_074500.2 | ||||||
| Ehrlichia muris | 99 | KU535865.1 | ||||||
| Ehrlichia minasensis | 99 | NR_148800.1 | ||||||
| Ehrlichia ruminantium | Ehrlichia ruminantium Tick116 | 1 | 1 | MK049848 | 207 | Ehrlichia ruminantium | 100 | NR_074155.1 |
| Babesia bigemina | Babesia bigemina Tick222 | 2 | 1 | MK071738 | 99 | Babesia bigemina | 100 | KP710227.1 |
| Babesia bovis | Babesia bovis Tick497 | 2 | 2 | MK071739 | 100 | Babesia bovis | 99 | AB367921.1 |