Table 1.
# | Data element | Data model element | Type | Description |
---|---|---|---|---|
1 | Blood collection tube type | blood_tube_type |
Controlled vocabulary from:
|
The kind of tube used to collect the sample(s) taken from a biological entity for testing, diagnostic, propagation, treatment, or research purposes. |
2 | Sample composition | Composition |
Controlled vocabulary from:
|
Sample type describing the cellular composition of the sample, as specified from a controlled vocabulary, containing clinical, contrived, and other terms. |
3 | Shipping temperature | shipping_temperature | Float | The temperature, in centigrade, at which the biospecimen was kept while it was being transported from the procurement site to its processing destination. |
4 | Blood fractionalization method | blood_fractionation_method | String | The name or description of the method used to obtain the blood fraction sample. (e.g., Ficoll Method, Novartis Protocol #001, 2,000 g centrifuge at 4°C with gentle deceleration). Alternatively, if you have provided a detailed protocol, enter its file_name here. |
5 | Time to fractionation | hours_to_fractionation_upper, hours_to_fractionation_lower – |
|
The upper/lower limit on the amount of time, in hours, between the blood draw and the fractionation into its components. If the exact time is known, make this value equal to that of the lower limit. If the time is completely unknown, enter Unknown. If no fractionation was performed on this sample, enter Not Applicable. |
6 | Analyte isolation method | analyte_isolation_method | String | The name or general description of the method used to isolate the analyte. Alternatively, if you have provided a protocol, put the file_name here. |
7 | Time to freezer | hours_to_freezer_upper, hours_to_freezer_lower |
|
The upper/lower limit on the amount of time, in hours, that it took between the sample being fractionated and the aliquot being frozen or otherwise preserved. If the exact time is known, make this value equal to that of the lower limit. If the time is completely unknown, enter Unknown. If no fractionation was performed on this sample, enter Not Applicable. |
8 | Storage temperature | storage_temperature | Float | The temperature, in centigrade, at which the aliquot was preserved and/or stored. |
9 | Concentration: cellular concentration or molecular concentration | molecular_concentration or cellular_concentration | Float | If the analyte is a molecule (e.g., DNA or RNA), report the observed concentration in nanograms per microliter (for molecular concentration). If the measurement is a cell count, then this is reported as cells per microliter (cellular_concentration) |
10 | Assay method | assay_method |
Controlled vocabulary from:
|
General name or description of the method used to characterize the analyte. |
11 | Time to assay | days_to_assay | Integer | The amount of time, in days, between the date used for index and the assay used to address this analyte. |