Skip to main content
. 2020 Apr 15;201(8):e26–e51. doi: 10.1164/rccm.202002-0251ST

Table 3.

Key Infectious and Noninfectious Differential Diagnoses for Granulomatous Lesions within Commonly Biopsied Sites

  Granulomatous Lesion within These Sites:
Testing and Clinical Pearls
  Lung Lymph Node Skin Liver Bone Marrow
Infectious etiologies            
 Bacteria            
  Tuberculosis* X X X X X Culture is diagnostic gold standard; IFN-γ release assay used for screening, and preferable to tuberculin skin testing due to anergy
  Nontuberculous mycobacteria (MAC and M. kansasii)* X X X X X Culture is the gold standard
  Aspiration pneumonia* X         Culture
  Brucella   X X X X Serum agglutination and ELISA; livestock exposure history
  Tropheryma whippelii   X   X   Periodic acid–Schiff stain; immunohistochemistry testing; diarrhea, weight loss, and joint pains
  Mycobacterium leprae     X     Culture is the gold standard, but can be difficult; histology; PCR
Francisella tularensis   X X     Serologic assay, then repeat in 2 wk; rabbit exposure
Bartonella henselae   X X     Titers >1:256; cat exposure
  Coxiella burnetii       X X Serology; PCR; livestock exposure
 Fungi            
  Aspergillus* X   X   X Culture; Aspergillus IgG; histology
  Histoplasma* X X X   X Culture; urine histoplasma antigen
  Blastomyces* X   X     Culture; histology; blasto Ag is nonspecific
  Coccidioides* X       X Serologic tests using EIA for IgM and IgG; then confirmatory immunodiffusion
  Cryptococcus X   X X X Cryptococcal serum antigen
  Pneumocystis X         Histology; screen with β-d-glucan assay
 Viruses            
  Herpes zoster X   X     Granulomas may occasionally be found
 Parasitic            
  Toxoplasma gondii   X X X   Toxoplasma serologic assay IgM and IgG
  Schistosomiasis X   X X   Serology and microscopic visualization of eggs in stool or urine
  Leishmaniasis     X X   Histology and PCR for Leishmania
  Echinococcosis     X X   EIA; ultrasound imaging
  Enterobius     X X   Pinworm paddle test, then microscopy
  Dirofilaria X         Histology; eosinophilia
Noninfectious etiologies            
 Malignancy            
  Lymphoma* X X X X X Clonal cell population; rarely can have elevated serum ACE
  Sarcoid-like reaction to tumor* X X X X X PET useful for selecting biopsy site but not diagnostic; biopsy must be performed to diagnose
  Lymphomatoid granulomatosis     X     Atypical clonal EBV-positive B cells; multiple pulmonary nodules with lymphocytic transmural angiitis and granulomas noted sometimes in skin
  Germ cell tumor   X       Serum α fetoprotein, human chorionic gonadotropin, lactate dehydrogenase
 Autoimmune or immune dysfunction            
  ANCA-associated vasculitides (GPA, MPA, and EGPA) X   X     MPO or PR3 ANCA+, renal disease, necrotizing vasculitis; eosinophilic infiltration if EGPA
  GLILD associated with CVID X X       Nonnecrotizing granulomas, LIP, and follicular bronchiolitis on lung biopsy; hypogammaglobulinemia and recurrent infections
  Rheumatoid nodules     X     Multiple subpleural nodules in patient with anti-CCP antibodies, arthralgias; necrotizing granulomas
  Langerhans cell histiocytosis X X X X X Young smoker; multiple bizarre-shaped upper lung zone cysts and/or nodules; Langerhans cell stain CD1a and S100 positive; eosinophilic granulomas most common
  IgG4-related disease X X X X X Elevated serum IgG4; elevated tissue IgG4+ plasma cell count and IgG4:IgG ratio; granulomas rare; differential diagnosis with multicentric Castleman disease
  Inflammatory bowel disease X   X X   GI symptoms; granulomatous bronchiolitis
  Primary biliary cholangitis       X   Cholestasis; antimitochondrial antibodies; portal based, poorly formed granulomas with bile duct destruction
  Primary sclerosing cholangitis       X   Cholestasis; P-ANCA+; ulcerative colitis associated; biliary strictures present, granulomas rare and not associated with bile duct destruction
  Autoimmune hepatitis           Abnormal liver function tests and autoantibodies (e.g., anti–smooth muscle); syncytial multinucleated giant cells are rare in adults but may be observed in children or adolescents
 Exposures            
  Hypersensitivity pneumonitis* X X       Organic exposure, small poorly formed interstitial granulomas in interstitium, prominent lymphocytic infiltrates, chronic inflammatory infiltrates accentuated around bronchioles
  Hot tub lung syndrome (MAC exposure with hypersensitivity features) X X       Aerosolized water exposure, MAC cultured from sputum, lung or hot tub, large well-formed granulomas in bronchiole lumens
  Pneumoconiosis (such as beryllium, titanium, aluminum, zirconium, cobalt, and others) X X X     Inorganic exposure history
  Drug-induced granulomatous disease (including but not limited to IFN, checkpoint inhibitor, anti-TNF, and/or biologic therapies)* X X X X X Usually nonnecrotizing granulomas. Drug exposure history essential. Seewww.pneumotox.com for full list
  Foreign body granulomatosis (such as talc aspirated or injected, tattoo ink)* X X X     Serum ACE elevated in many patients; particles found on biopsy; perivascular granulomas
  Steatosis (lipogranulomas)       X   Central lipid vacuole; ingestion of mineral oil or hepatic steatosis
 Idiopathic            
  Sarcoidosis X X X X X Multisystemic; well formed, usually nonnecrotic granulomas
  Necrotizing sarcoid granulomatosis X X       Granulomatous pneumonitis with necrosis and vasculitis; multiple necrotic lung nodules
  Histiocytic necrotizing lymphadenitis (Kikuchi’s disease)   X       Cervical lymphadenopathy and low-grade fever. Granulomas are not found, although necrotic areas with histiocytes are present
  GLUS   X X X X Lacks progressive lung parenchymal disease, elevated serum calcium, 1,25-dihydroxyvitamin D, and ACE
  Bronchocentric granulomatosis X         Associated with asthma and Aspergillus infection in 50%. Necrotizing granulomas exclusively in bronchi and bronchioles

Definition of abbreviations: ACE = angiotensin-converting enzyme; Ag = antigen; EIA = enzyme-linked immunoassays; ANCA = antineutrophil cytoplasmic antibody; CCP = cyclic citrullinated peptide; CVID = common variable immune deficiency; EBV = Epstein-Barr virus; EGPA = eosinophilic GPA; GI = gastrointestinal; GLILD = granulomatous–lymphocytic interstitial lung disease; GLUS = granulomatous lesions of unknown significance syndrome; GPA = granulomatosis with polyangiitis; LIP = lymphocytic interstitial pneumonia; MAC = Mycobacterium avium complex; M. kansasii = Mycobacterium kansasii; MPA = microscopic polyangiitis; MPO = myeloperoxidase; p-ANCA = perinuclear ANCA; PR3 = PR3-ANCA; PET = positron emission tomography; TNF = tumor necrosis factor.

*

More commonly found alternative diagnoses for granulomatous disease in U.S. populations. The differential diagnosis should be prioritized on the basis of the individual’s clinical history and presentation.