TABLE 1.
Sizes of the large-scale 16S rRNA data sets included in this studya
Data set | No. of samples |
Sequencing platform | Sequencing region |
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
G-1 | G-2 | G-3 | G-4 | G-5 | G-6 | G-7 | G-8 | Total | |||
Zeller | 50 | 38 | 41 | 48 | 48 | 225 | Illumina_MiSeq | V4 | |||
Flemer | 62 | 23 | 69 | 59 | 31 | 2 | 74 | 65 | 385 | Illumina_MiSeq | V3_V4 |
Burns | 44 | 44 | 88 | Illumina_MiSeq | V5_V6 | ||||||
Baxter | 172 | 198 | 120 | 490 | Illumina_MiSeq | V4 | |||||
China_GBA | 61 | 52 | 52 | 52 | 52 | 269 | P_454 | V1_V4 | |||
MAL2 | 21 | 23 | 44 | Illumina_MiSeq | V3_V4 | ||||||
MAL1 | 6 | 20 | 21 | 47 | Illumina_MiSeq | V3_V4 | |||||
Zackular | 30 | 30 | 30 | 90 | Illumina_MiSeq | V4 | |||||
Kostic | 60 | 55 | 115 | P_454 | V3_V5 | ||||||
PNAS | 11 | 2 | 2 | 23 | 23 | 61 | P_454 | V3_V5 | |||
Brazil | 18 | 18 | 36 | ION_TORRENT | V4_V5 | ||||||
China_KM | 8 | 8 | 16 | P_454 | V1_V2 | ||||||
China_SH | 20 | 31 | 31 | 82 | Illumina_MiSeq | V3_V4 | |||||
China_QD | 11 | 10 | 21 | Illumina_HiSeq_2500 | V3_V4 | ||||||
China_SHTJ | 65 | 65 | 130 | Illumina_MiSeq | V4 | ||||||
Total | 325 | 289 | 270 | 175 | 116 | 87 | 415 | 422 | 2,099 | NA | NA |
G-1, Normal_Stools (healthy control stool samples); G-2, CRA_Stools (colorectal adenoma stool samples); G-3, CRC_Stools (colorectal carcinoma stool samples); G-4, Normal_Tissue (healthy control colorectal tissue); G-5, CRA_Tissue_Adjacent (colorectal adenoma adjacent tissue); G-6, CRA_Tissue (colorectal adenoma tissue); G-7, CRC_Tissue_Adjacent (colorectal carcinoma adjacent tissue); G-8, CRC_Tissue (colorectal carcinoma tissue); NA, not available.