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. 2020 Apr 14;5(2):e00138-20. doi: 10.1128/mSystems.00138-20

TABLE 1.

Sizes of the large-scale 16S rRNA data sets included in this studya

Data set No. of samples
Sequencing platform Sequencing
region
G-1 G-2 G-3 G-4 G-5 G-6 G-7 G-8 Total
Zeller 50 38 41 48 48 225 Illumina_MiSeq V4
Flemer 62 23 69 59 31 2 74 65 385 Illumina_MiSeq V3_V4
Burns 44 44 88 Illumina_MiSeq V5_V6
Baxter 172 198 120 490 Illumina_MiSeq V4
China_GBA 61 52 52 52 52 269 P_454 V1_V4
MAL2 21 23 44 Illumina_MiSeq V3_V4
MAL1 6 20 21 47 Illumina_MiSeq V3_V4
Zackular 30 30 30 90 Illumina_MiSeq V4
Kostic 60 55 115 P_454 V3_V5
PNAS 11 2 2 23 23 61 P_454 V3_V5
Brazil 18 18 36 ION_TORRENT V4_V5
China_KM 8 8 16 P_454 V1_V2
China_SH 20 31 31 82 Illumina_MiSeq V3_V4
China_QD 11 10 21 Illumina_HiSeq_2500 V3_V4
China_SHTJ 65 65 130 Illumina_MiSeq V4
Total 325 289 270 175 116 87 415 422 2,099 NA NA
a

G-1, Normal_Stools (healthy control stool samples); G-2, CRA_Stools (colorectal adenoma stool samples); G-3, CRC_Stools (colorectal carcinoma stool samples); G-4, Normal_Tissue (healthy control colorectal tissue); G-5, CRA_Tissue_Adjacent (colorectal adenoma adjacent tissue); G-6, CRA_Tissue (colorectal adenoma tissue); G-7, CRC_Tissue_Adjacent (colorectal carcinoma adjacent tissue); G-8, CRC_Tissue (colorectal carcinoma tissue); NA, not available.