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. Author manuscript; available in PMC: 2021 Apr 2.
Published in final edited form as: Mol Cell. 2020 Mar 2;78(1):31–41.e5. doi: 10.1016/j.molcel.2020.02.011

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit polyclonal anti-FLAG (1:2,000) Sigma-Aldrich Cat. #F7425;
RRID:AB_439687
Rabbit monoclonal anti-IRP2 (1:1,000/1:250) Cell Signaling Technology Cat. #37135S;
RRID:AB_2799110
Rabbit polyclonal anti-CUL1 (1:1,000) Thermo Fisher Scientific Cat. #71–8700;
RRID:AB_2534002
Anti-SKP1 (1:5,000) Michele Pagano’s lab N/A
Anti-rabbit, HRP-conjugated (1:5,000) GE Healthcare Cat. #NA934;
RRID:AB_2722659
Mouse monoclonal anti-β-Actin (1:1,000) Cell Signaling Technology Cat. #3700S
Mouse monoclonal anti-Flag (1:1,000) Cell Signaling Technology Cat. #8146S
Goat anti-Rabbit IgG (H+L) Alexa Fluor Plus 800 (1:10,000) Invitrogen Cat. #A32735
Goat anti-Mouse IgG (H+L) Alexa Fluor 680 Invitrogen Cat. #A28183
Bacterial and Virus Strains
E. coli BL21(DE3) NEB Cat. #C2527I
E. coli DH5α NEB Cat. #C2987I
E. coli DH10Bac Life Technologies Cat. #10361012
Chemicals, Peptides, and Recombinant Proteins
Ammonium ferric citrate (FAC) Sigma-Aldrich Cat. #F5879
L-cysteine free base MP Biomedicals Cat. #101444
Sodium Dithionite Acros Organics Cat. #169590250
Potassium hexacyanoferrate (K3Fe(CN)6) Sigma-Aldrich Cat. #31253
Lipofectamine 2000 Invitrogen Cat. #11668019
Polyethylenimine Polysciences Cat. # 24765–1
MG132 Peptides International Cat. #IZL-3175v
MLN4924 Active Biochem Cat. # A-1139
TEV protease In house N/A
Critical Commercial Assays
SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat. #PI34580
SuperSignal West Femto Chemiluminescent Substrate Thermo Fisher Scientific Cat. #PI34095
Deposited Data
IRP2-FBXL5-SKP1 complex model coordinates This paper PDB: 6VCD
IRP2-FBXL5-SKP1 complex cryo-EM map This paper EMDB: EMD-21149
Experimental Models: Cell Lines
Spodoptera frugiperda: Sf9 Life Technologies Cat. #B825–01
Trichoplusia ni: HighFive Life Technologies Cat. #B85502
Human: HEK293 ATCC Cat. #CRL-1573
Human: HEK293T ATCC Cat. #CRL-3216
Oligonucleotides
Biotinylated Ferritin H IRE RNA IDT N/A
Recombinant DNA
pET-FBXL5-SKP1 This paper N/A
pET-FBXL5 Mutants-SKP1 This paper N/A
pFB-GST-IRP2 This paper N/A
pFB-GST-IRP2 Mutants This paper N/A
pGEX-CUL1NTD This paper N/A
pcDNA5/FRT/TO Empty Vector Addgene N/A
pcDNA5/FRT/TO-HA-FLAG-FBXL5C492 This paper N/A
pcDNA5/FRT/TO-HA-FLAG-FBXL5C492 4C>A This paper N/A
pcDNA5/FRT/TO-FLAG-IRP2 Vashisht et al., 2009 https://science.sciencemag.org/content/326/5953/718/tab-figures-data
Software and Algorithms
Phenix Adams et al., 2012 https://www.phenix-online.org/
Coot Emsley and Cowtan, 2004 http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PyMOL Pymol http://pymol.org/2/
UCSF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
Relion-3.0 Zivanov et al., 2018 https://www3.mrc-lmb.cam.ac.uk/relion/
cisTEM Grant et al., 2018 https://cistem.org
GCTF Zhang, 2016 https://www.mrc-lmb.cam.ac.uk/kzhang/
MATLLAB 2019a MathWorks N/A
EasySpin Stoll and Schweiger, 2016 http://easyspin.org
Image Studio LI-COR https://www.licor.com/bio/image-studio-lite/
Prism 8 GraphPad N/A
Other
EnSpire reader PerkinElmer N/A
Anaerobic glove box McCoy N/A
ANTI-FLAG M2 Affinity Gel Sigma-Aldrich Cat. #A2220
Glutathione Sepharose 4B GE healthcare Cat. #17-0756-05
Ni Sepharose excel GE healthcare Cat. #17-3712-02
HiTrap Q-HP, 1mL GE healthcare Cat. #17-1153-01
Superdex 200 Increase 10/300 GL GE healthcare Cat. #28990944
AlphaScreen Streptavidin-coated donor beads PerkinElmer Cat. #6760002S
AlphaLISA anti-GST AlphaScreen acceptor beads PerkinElmer Cat. #AL110C
4 mm O.D. quartz tubes Wilmad-LabGlass Cat. #707-SQ-250M
EMX X-band spectrometer Bruker N/A
ESR900 helium cryostat OxfordInstruments N/A