REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-FLAG (1:2,000) | Sigma-Aldrich | Cat. #F7425; RRID:AB_439687 |
Rabbit monoclonal anti-IRP2 (1:1,000/1:250) | Cell Signaling Technology | Cat. #37135S; RRID:AB_2799110 |
Rabbit polyclonal anti-CUL1 (1:1,000) | Thermo Fisher Scientific | Cat. #71–8700; RRID:AB_2534002 |
Anti-SKP1 (1:5,000) | Michele Pagano’s lab | N/A |
Anti-rabbit, HRP-conjugated (1:5,000) | GE Healthcare | Cat. #NA934; RRID:AB_2722659 |
Mouse monoclonal anti-β-Actin (1:1,000) | Cell Signaling Technology | Cat. #3700S |
Mouse monoclonal anti-Flag (1:1,000) | Cell Signaling Technology | Cat. #8146S |
Goat anti-Rabbit IgG (H+L) Alexa Fluor Plus 800 (1:10,000) | Invitrogen | Cat. #A32735 |
Goat anti-Mouse IgG (H+L) Alexa Fluor 680 | Invitrogen | Cat. #A28183 |
Bacterial and Virus Strains | ||
E. coli BL21(DE3) | NEB | Cat. #C2527I |
E. coli DH5α | NEB | Cat. #C2987I |
E. coli DH10Bac | Life Technologies | Cat. #10361012 |
Chemicals, Peptides, and Recombinant Proteins | ||
Ammonium ferric citrate (FAC) | Sigma-Aldrich | Cat. #F5879 |
L-cysteine free base | MP Biomedicals | Cat. #101444 |
Sodium Dithionite | Acros Organics | Cat. #169590250 |
Potassium hexacyanoferrate (K3Fe(CN)6) | Sigma-Aldrich | Cat. #31253 |
Lipofectamine 2000 | Invitrogen | Cat. #11668019 |
Polyethylenimine | Polysciences | Cat. # 24765–1 |
MG132 | Peptides International | Cat. #IZL-3175v |
MLN4924 | Active Biochem | Cat. # A-1139 |
TEV protease | In house | N/A |
Critical Commercial Assays | ||
SuperSignal West Pico Chemiluminescent Substrate | Thermo Fisher Scientific | Cat. #PI34580 |
SuperSignal West Femto Chemiluminescent Substrate | Thermo Fisher Scientific | Cat. #PI34095 |
Deposited Data | ||
IRP2-FBXL5-SKP1 complex model coordinates | This paper | PDB: 6VCD |
IRP2-FBXL5-SKP1 complex cryo-EM map | This paper | EMDB: EMD-21149 |
Experimental Models: Cell Lines | ||
Spodoptera frugiperda: Sf9 | Life Technologies | Cat. #B825–01 |
Trichoplusia ni: HighFive | Life Technologies | Cat. #B85502 |
Human: HEK293 | ATCC | Cat. #CRL-1573 |
Human: HEK293T | ATCC | Cat. #CRL-3216 |
Oligonucleotides | ||
Biotinylated Ferritin H IRE RNA | IDT | N/A |
Recombinant DNA | ||
pET-FBXL5-SKP1 | This paper | N/A |
pET-FBXL5 Mutants-SKP1 | This paper | N/A |
pFB-GST-IRP2 | This paper | N/A |
pFB-GST-IRP2 Mutants | This paper | N/A |
pGEX-CUL1NTD | This paper | N/A |
pcDNA5/FRT/TO Empty Vector | Addgene | N/A |
pcDNA5/FRT/TO-HA-FLAG-FBXL5C492 | This paper | N/A |
pcDNA5/FRT/TO-HA-FLAG-FBXL5C492 4C>A | This paper | N/A |
pcDNA5/FRT/TO-FLAG-IRP2 | Vashisht et al., 2009 | https://science.sciencemag.org/content/326/5953/718/tab-figures-data |
Software and Algorithms | ||
Phenix | Adams et al., 2012 | https://www.phenix-online.org/ |
Coot | Emsley and Cowtan, 2004 | http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
PyMOL | Pymol | http://pymol.org/2/ |
UCSF Chimera | Pettersen et al., 2004 | https://www.cgl.ucsf.edu/chimera/ |
Relion-3.0 | Zivanov et al., 2018 | https://www3.mrc-lmb.cam.ac.uk/relion/ |
cisTEM | Grant et al., 2018 | https://cistem.org |
GCTF | Zhang, 2016 | https://www.mrc-lmb.cam.ac.uk/kzhang/ |
MATLLAB 2019a | MathWorks | N/A |
EasySpin | Stoll and Schweiger, 2016 | http://easyspin.org |
Image Studio | LI-COR | https://www.licor.com/bio/image-studio-lite/ |
Prism 8 | GraphPad | N/A |
Other | ||
EnSpire reader | PerkinElmer | N/A |
Anaerobic glove box | McCoy | N/A |
ANTI-FLAG M2 Affinity Gel | Sigma-Aldrich | Cat. #A2220 |
Glutathione Sepharose 4B | GE healthcare | Cat. #17-0756-05 |
Ni Sepharose excel | GE healthcare | Cat. #17-3712-02 |
HiTrap Q-HP, 1mL | GE healthcare | Cat. #17-1153-01 |
Superdex 200 Increase 10/300 GL | GE healthcare | Cat. #28990944 |
AlphaScreen Streptavidin-coated donor beads | PerkinElmer | Cat. #6760002S |
AlphaLISA anti-GST AlphaScreen acceptor beads | PerkinElmer | Cat. #AL110C |
4 mm O.D. quartz tubes | Wilmad-LabGlass | Cat. #707-SQ-250M |
EMX X-band spectrometer | Bruker | N/A |
ESR900 helium cryostat | OxfordInstruments | N/A |