Table 4.

Genomic vs. pedigree based prediction accuracies for amoebic gill disease. PBLUP_I and PBLUP_II – Pedigree based breeding values using phenotypes from only genotyped or all phenotyped animals, respectively. GBLUP - Genomic breeding values from only genotype animals, and ssGBLUP - Genomic breeding values from all genotyped and phenotyped animals obtained with a combined relationship matrix (H).

Model	Number of fish			Accuracy
	Total	Training	validation
PBLUP_I	1,141	845	296	0.32(0.10)
GBLUP	1,141	845	296	0.35(0.09)
PBLUP_II	3,663	3,367	296	0.43(0.11)
ssGBLUP	3,663	3,367	296	0.47(0.12)