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. 2020 Apr 15;13:196. doi: 10.1186/s13071-020-04064-8

Table 3.

List of MHC II epitopes with characteristic affinity and coverage

Epitope no. Selected HLA epitopes Protein ID Starting position Vaxijen score IEDB class II rank IL-10 World TPC (%) Epitope conservancya in other Leishmania spp. in RefSeq database Selfb
H2-01 QDCKFVLVKAAAPAA E9BDB8 325 0.77 6.12 No 98.71 L. major, L. infantum No
H2-02 AAYYIKAAERIAAKG E9BI76 321 0.94 4.67 No 97.15 L. major, L. infantum No
H2-03 TFVKWNFTAFLVDKD E9BI90 121 1.19 8.91 No 97.76 L. infantum No
H2-04 LGTTFVKWNFTAFLV E9BI90 118 0.97 9.34 No 97.46 L. infantum No
H2-05 TTFVKWNFTAFLVDK E9BI90 120 1.06 8.31 No 97.76 L. infantum No
H2-06 LTKLFRYKSSRSESE E9BKM5 486 0.82 6.18 No 95.45 L. major, L. infantum No
H2-07 WLKGYFRLGVAMESM E9BT68 71 1.01 7.98 No 99.32 L. major, L. infantum, L. mexicana No
H2-08 APLMLYISKMVPTAD E9BT80 376 1.10 3.24 No 93.09 L. major, L. infantum, L. mexicana, L. braziliensis, L. panamensis No
H2-09 NTDFVMYVASVPSEG P23223 194 1.10 8.86 No 90.42 L. infantum No
H2-10 ASDAGYYSALTMAIF P23223 335 0.89 5.58 No 98.63 None No
H2-11 LVKYLIPQALQLHTE P23223 143 0.85 4.67 No 98.72 L. infantum No
H2-12 DILVKYLIPQALQLH P23223 141 0.74 2.72 No 94.14 L. infantum No
H2-13 SDAGYYSALTMAIFQ P23223 336 0.70 9.81 No 99.53 None
H2-14 CNGGLMLQAFEWLLR Q95WR6 188 1.04 8.42 No 94.48 L. infantum No

a100% identity for absolute query cover

bIdentity threshold in human for amino acids > 12 (80%)