Table 3.
Average runtimes (in seconds) on 1000-species datasets with low ILS, using NJst starting trees and RAxML constraint trees
| GTM | NJMerge | TreeMerge | |
|---|---|---|---|
| 10 Exons (n=2) | 0.43 | 946 | 477 |
| 10 Introns (n=8) | 0.42 | 732 | 446 |
| 25 Exons (n=9) | 0.41 | 728 | 583 |
| 25 Introns (n=10) | 0.43 | 685 | 543 |
| 1000 Exons (n=20) | 0.43 | 2055 | N/A |
| 1000 Introns (n=20) | 0.43 | 2010 | N/A |
The value for n is the number of replicates being compared, where all three methods finished; NJMerge failed or timed out on the missing 10 and 25-gene low ILS replicates. TreeMerge timings were unavailable for 1000 genes