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. 2020 May;26(5):581–594. doi: 10.1261/rna.073965.119

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© 2020 Aguiar et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society

This article is distributed exclusively by the RNA Society for the first 12 months after the full-issue publication date (see http://rnajournal.cshlp.org/site/misc/terms.xhtml). After 12 months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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FIGURE 3. — Comparative analysis of the largest EVE cluster in AaegL3 and AaegL5 versions of the A. aegypti genome. (A) Dotplot showing pairwise comparison of the largest EVE cluster in AaegL3 and AaegL5 versions of the mosquito genome. Shaded areas show a divergent region between the two genome versions that is further analyzed in C. (B) Graph showing coverage of the region spanning the largest EVE cluster identified in AaegL3 and AaegL5. (C) Zoom of a divergent region within the largest EVE cluster (shaded area in A) in the AaegL5 version of the mosquito genome showing the coverage of PacBio long reads. The structure of the region shows a repeated 5-kb block composed of a putative LTR retrotransposon containing capsid and a reverse transcriptase/integrase genes. (D) Single long reads containing the full repeated block give support for the assembly in the AaegL5 version of the A. aegypti genome.