Table 2.
Illumina sequencing, filtering and mapping statistics
| Reads | CLL250 | CLL250_act | CLL238 | CLL238_act |
|---|---|---|---|---|
| Raw counts | 34 248 055 | 38 889 936 | 33 948 020 | 38 421 323 |
| Filtering steps | ||||
| Purity filter | 28 771 020 | 32 477 113 | 29 210 502 | 31 924 855 |
| Additional filter | 22 479 555 | 27 956 701 | 26 039 540 | 27 613 647 |
| Burrows‐Wheeler Aligner mapping steps | ||||
| Ribosomal | 5 050 513 | 5 022 371 | 3 851 214 | 4 627 416 |
| Genomic | 13 790 644 | 18 914 191 | 18 738 268 | 17 791 494 |
| Transcriptomic | 1 634 399 | 2 050 829 | 1 677 217 | 2 144 262 |
| Final unmapped | 2 004 005 | 1 969 310 | 1 772 841 | 3 050 475 |
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