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. Author manuscript; available in PMC: 2021 Apr 3.
Published in final edited form as: J Proteome Res. 2020 Feb 27;19(4):1635–1646. doi: 10.1021/acs.jproteome.9b00840

Table 1.

Sample Fractionation and Mass Spectrometry Analysis

sample set fractionation method number of fractions MS/MS analysis number of runs per set
sets 1–5 Pierce high-pH reversed-phase peptide fractionation kit 9 LC-MS/MS 9
sets 6–7 low-pH nano-RPLC 11 CZE-MS/MS 11
17 LC-MS/MS 17
sets 8–13 Pierce high-pH reversed-phase peptide fractionation kit 10 LC-MS/MS 10