Table 1.

Summary of Reads Mapping to the Cattle Reference Genome

Samples	Adult 1	Adult 2	Adult 3	Calf 1	Calf 2	Calf 3
Raw reads	94,367,280	119,126,430	109,773,454	105,005,806	91,779,236	93,247,554
Clean reads	90,859,922	117,571,292	105,144,278	101,605,688	88,865,576	89,537,724
Mapped reads	83,050,441	110,136,200	98,211,003	96,538,809	84,670,910	84,669,040
Mapping ratio	91.4%	93.68%	93.41%	95.01%	95.28%	94.56%
Uniquely mapped reads	69,609,751	100,240,434	89,608,961	88,815,771	77,779,872	77,656,770
Unique mapping ratio	76.61%	85.26%	85.22%	87.41%	87.53%	86.73%