Bacterial Strains |
|
Escherichia coli K12 AB1157 |
Bachmann, 1996 |
CGSC#1157 |
AB1157 (Ab246) mukB(D1406A)-mYpet-kan
|
Badrinarayanan et al., 2012a |
N/A |
AB1157 (SN191) lacO240-hyg at L3 (2268 kb) tetO240-gen at R3 (852 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt mukB-mYpet-frt
|
Lab collection |
N/A |
AB1157 (SN192) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt mukB-mYpet-frt
|
Nolivos et al., 2016 |
N/A |
AB1157 (SN301) lacO240-hyg at L3 (2268 kb) tetO240-gen at R3 (852 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt mukB-mYpet-frt ΔmatP::cat
|
Lab collection |
N/A |
AB1157 (SN302) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt mukB-mYpet-frt ΔmatP::cat
|
Nolivos et al., 2016 |
N/A |
AB1157 (SN311) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt mukB(E1407Q)-mYpet-kan
|
Nolivos et al., 2016 |
N/A |
AB1157 (JM41) mukB-HaloTag-kan
|
Banaz et al., 2019 |
N/A |
AB1157 (JM56) mukB-HaloTag-frt ΔmukE::kan
|
This study |
N/A |
AB1157 (JM90) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt kan-araC-Para-smtA-mukFE-mukB-mYpet-frt
|
This study |
N/A |
AB1157 (JM91) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt kan-araC-Para-smtA-mukFE-mukB-mYpet-frt, ΔmatP::cat
|
This study |
N/A |
AB1157 (JM97) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt frt-araC-Para-smtA-mukFE-mukB(E1407Q)-mYpet-kan
|
This study |
N/A |
AB1157 (JM101) lacO240-hyg at L3 (2268 kb) tetO240-gen at R3 (852 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt kan-araC-Para-smtA-mukFE-mukB-mYpet-frt
|
This study |
N/A |
AB1157 (JM103) frt-araC-Para-smtA-mukFE-mukB-HaloTag-kan
|
This study |
N/A |
AB1157 (JM124) lacO240-hyg at ori1 (3908 kb) tetO240-gen at ter3 (1644 kb) ΔleuB::Plac-lacI-mCherry-frt ΔgalK::Plac-tetR-mCerulean-frt frt-araC-Para-smtA-mukFE-mukB(D1406A)-mYpet-kan
|
This study |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
DL-serine hydroxamate |
Sigma-Aldrich |
Cat#S4503 |
|
Deposited Data |
|
Raw and analyzed data |
This study |
https://doi.org/10.17632/d7p7hk3zzv.1 |
|
Oligonucleotides |
|
PCR primers |
Eurogentec |
See Table S1
|
|
Software and Algorithms |
|
MATLAB |
MathWorks |
https://uk.mathworks.com/products/matlab.html |
SuperSegger |
Stylianidou et al., 2016 |
https://github.com/wiggins-lab/SuperSegger/wiki |
NIS-Elements AR |
Nikon |
https://www.microscope.healthcare.nikon.com |
SoftWoRx |
GE Healthcare |
https://www.gelifesciences.com/en/gb/shop/cell-imaging-and-analysis/high-and-super-resolution-microscopes/instruments/deltavision-omx-sr-imaging-system-p-03020 |
Chromagnon |
Matsuda et al., 2018 |
https://github.com/macronucleus/chromagnon |
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/ |
SIMcheck |
Ball et al., 2015 |
https://github.com/MicronOxford/SIMcheck |
3Dscript |
Schmid et al., 2019 |
https://imagej.net/3Dscript |
SGNS2 |
Lloyd-Price et al., 2012 |
https://sites.google.com/view/andreribeirolab/home/software |