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. 2019 Sep 23;69(3):566–578. doi: 10.1093/sysbio/syz063

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Figure 3. — Results on RNASim-VS. a) Placement accuracy with taxon sampling ranging from 500 to 200,000. b) The empirical cumulative distribution of the delta error, shown for 500 10,000 where EPA-ng can run. c,d) Running time and peak memory usage of placement methods for a single placement. Lines are fitted in the log–log scale and their slope (indicated on the figure) empirically estimates the polynomial degree of the asymptotic growth (). APPLES lines are fitted to 5000 points because the first two values are small and irrelevant to asymptotic behavior. All calculations are on 8-core, 2.6GHz Intel Xeon CPUs (Sandy Bridge) with 64GB of memory, with each query placed independently and given 1 CPU core and the entire memory.

Inline graphic — Results on RNASim-VS. a) Placement accuracy with taxon sampling ranging from 500 to 200,000. b) The empirical cumulative distribution of the delta error, shown for 500 10,000 where EPA-ng can run. c,d) Running time and peak memory usage of placement methods for a single placement. Lines are fitted in the log–log scale and their slope (indicated on the figure) empirically estimates the polynomial degree of the asymptotic growth (). APPLES lines are fitted to 5000 points because the first two values are small and irrelevant to asymptotic behavior. All calculations are on 8-core, 2.6GHz Intel Xeon CPUs (Sandy Bridge) with 64GB of memory, with each query placed independently and given 1 CPU core and the entire memory.