Table 3.

Percentage of correct placements (shown as %) and the delta error () on the RNASim data sets with various backbone size (). % and is over 1000 placements (except n = 200,000, which is over 200 placements). Running pplacer and EPA-ng was not possible (n.p) for trees with at least 10,000 leaves and failed in some cases (number of fails shown) for 5000 leaves.

	n =			n =			n =			n = 10,000			n = 100,000			n = 200,000
	%			%			%			%			%			%
APPLES*	75	0.32		71	0.43		77	0.37		79	0.33		84	0.25		87	0.25
CLOSEST	52	1.16		53	1.18		54	1.15		59	0.90		61	0.69		63	0.70
EPA-ng	73	0.33		73	0.31		78	0.24		79	0.22		n.p	n.p		n.p	n.p
pplacer	80	0.23		81	0.20		Fail (800)	n.p		n.p	n.p		n.p	n.p		n.p	n.p