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. 2020 Apr 14;8:e8901. doi: 10.7717/peerj.8901

Table 7. Summary of EasyCodeML analysis of positive selection on mitogenomes based on the maximum-likelihood tree.

Foreground branch Models ℓn L Estimates of parameters Model compared LRT P-value Positive sites
Branch model
A. americanus M0 −64946.8069 ω = 0.03373 M0 vs. two-ratios model 0.000000013
two-ratios model −64930.6151 ω0 = 0.03518, ω1 = 0.01848
Bufotes pewzowi M0 −64946.8069 ω = 0.03373 M0 vs. two-ratios model 0.531545543
two-ratios model −64946.6112 ω0 = 0.03390, ω1 = 0.03171
Site model
M0 −64946.8069 ω0 = 0.03373 M0 vs. M3 0.000000000 [] Not Allowed
M3 −63668.4498 ω0 = 0.00589, ω1 = 0.1674, ω2 = 112.9303
p0=0.8121, p1=0.1879, p2=0.00000
M1a −64433.7560 ω0 = 0.02376, ω1 = 1.00000 M1a vs. M2a 0.999941002 [] Not Allowed
p0=0.9531, p1=0.04689
M2a −64433.7561 ω0 = 0.02376, ω1 = 1.0000, ω2 = 52.2715
p0=0.9531, p1=0.04689, p2=0.0000
M7 −63763.2701 p = 0.1689, q = 2.4119 M7 vs.M8 0.000000000 3584 I 0.654, 3585 T 0.655, 3590 G 0.925, 3594 D 0.942 Not Allowed
M8 −63730.7785 ω0 = 1.00000, q = 2.5907
p0=0.9894, p1=0.01056, p2=0.1586
M8a −63633.2296 ω0 = 1.00000, q = 3.8578 M8a vs.M8 0.000000000 Not Allowed
p0=0.9986, p1=0.00145, p2=0.1656