Table 2. CLIP-tags with trimming and mapping for HNRNPC optimized-CLIP.
Sample | Raw read | Q. Passed read | Collapse duplicate | Mapped read | Mapped uniq read | ||||
---|---|---|---|---|---|---|---|---|---|
HNRNPC rep.1 | 1,251,256 | 1251250 | 100.00% | 1195888 | 95.60% | 330,100 | 27.60% | 329,741 | 99.90% |
HNRNPC rep.2 | 1,271,549 | 1271548 | 100.00% | 1199193 | 94.30% | 391,704 | 32.70% | 390,956 | 99.80% |
HNRNPC rep.3 | 1,305,395 | 1305392 | 100.00% | 1239696 | 95.00% | 354,010 | 28.60% | 353,400 | 99.80% |
*Percentages indicate the ratio against previous process.