Table 1.
Crystallographic statistics
Data Collection | ||||
---|---|---|---|---|
Data set | Tm$ SecA-SecYEG | Tm SecA-SecYEG | Bs SecA-Tm SecYE | Bs SecA-Aa SecYEG |
Compound | Se-Met SecYEG | native | native | native |
Resolution limit [Å] | 4.5 | 5.7 | 6.2 | 7.5 |
Space group | P212121 | P21 | P65 | P212121 |
Cell constants [Å]/[°] | 101.6, 156.0,358.1 | 172.5, 102.5, 181.9 | 240.3,240.3, 179.5 | 146.4, 168.0, 187.7 |
(a, b, c, / α, β, γ) | 90, 90, 90 | 90, 100.9, 90 | 90,90, 120 | 90,90, 90 |
Measured reflections | 76164 | 39014 | 28484 | 6238 |
Unique reflections | 34733 | 18704 | 13510 | 5416 |
Mean I/σ(I) | 16.1 (2.0)# | 16.5(1.5) | 26.2 (2.5) | 16.2(1.6) |
Rsym (%)a | 0.065 (0.85) | 0.055 (0.87) | 0.075 (>1.0) | 0.072 (0.76) |
Completeness (%) | 97.7 (89.7) | 93.3 (81.8) | 100.0(100.0) | 99.1 (99.8) |
Redundancy | 11.6 (8.8) | 3.8 (2.5) | 9.4 (9.0) | 3.5(3.6) |
SAD-Phasingb | ||||
FOM (from SOLVE) | 0.25 (0.12) | |||
FOM (post NCS averag.) | 0.72 (0.27) | |||
Refinement | Rigid body | |||
Resolution range [Å] | 15–4.5 | 15–6.2 | 15–7.5 | |
NCSc | 2 | 2 | 2 | 2 |
Rwork(%)‖ | 28.0 | 42.0 | 36.4 | |
Rfree (%)¶ | 32.2 | 42.7 | 38.4 | |
Number of Reflections | ||||
Total | 32721 | 9176 | 4884 | |
Rfree | 3269 | 1012 | 532 | |
Number of atomsd | ||||
Protein | 21312 | |||
Nonprotein | 62 | |||
Model geometry | ||||
r.m.s.d. bond length [Å] | 0.0097 | |||
r.m.s.d. bond angle [°] | 1.34 | |||
Average B-factor [Å2] | ||||
Main chain | 374 | |||
Side chain | 338 | |||
Ramachandran analvsise (for 1333 residues) | ||||
Most favored | 65.3 | |||
Allowed | 27.9 | |||
Generously allowed | 5.3 | |||
Disallowed | 1.5 |
Tm: T. maritima, Bs: B. subtilis, Aa: A. aeolicus
Values in parenthesis refer to the highest resolution shell.
, where I(hkl) is the integrated intensity of the reflection.
From 11 selenium sites identified per SecA-SecYEG complex in the resolution range from 15 to 6 Å. NCS averaging included phase extension to 4.5 Å.
Number of SecA-SecY complexes per ciystallographic asymmetric unit.
In the asymmetric unit.
For one SecA-SecYEG complex.
, where Fo and Fc are observed and calculated structure factors.
Ten percent of the data were excluded from refinement to calculate Rfree.