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. Author manuscript; available in PMC: 2020 Apr 17.
Published in final edited form as: Nature. 2008 Oct 16;455(7215):936–943. doi: 10.1038/nature07335

Table 1.

Crystallographic statistics

Data Collection
Data set Tm$ SecA-SecYEG Tm SecA-SecYEG Bs SecA-Tm SecYE Bs SecA-Aa SecYEG
Compound Se-Met SecYEG native native native
Resolution limit [Å] 4.5 5.7 6.2 7.5
Space group P212121 P21 P65 P212121
Cell constants [Å]/[°] 101.6, 156.0,358.1 172.5, 102.5, 181.9 240.3,240.3, 179.5 146.4, 168.0, 187.7
(a, b, c, / α, β, γ) 90, 90, 90 90, 100.9, 90 90,90, 120 90,90, 90
Measured reflections 76164 39014 28484 6238
Unique reflections 34733 18704 13510 5416
Mean I/σ(I) 16.1 (2.0)# 16.5(1.5) 26.2 (2.5) 16.2(1.6)
Rsym (%)a 0.065 (0.85) 0.055 (0.87) 0.075 (>1.0) 0.072 (0.76)
Completeness (%) 97.7 (89.7) 93.3 (81.8) 100.0(100.0) 99.1 (99.8)
Redundancy 11.6 (8.8) 3.8 (2.5) 9.4 (9.0) 3.5(3.6)
SAD-Phasingb
FOM (from SOLVE) 0.25 (0.12)
FOM (post NCS averag.) 0.72 (0.27)
Refinement Rigid body
Resolution range [Å] 15–4.5 15–6.2 15–7.5
NCSc 2 2 2 2
Rwork(%) 28.0 42.0 36.4
Rfree (%) 32.2 42.7 38.4
Number of Reflections
Total 32721 9176 4884
Rfree 3269 1012 532
Number of atomsd
Protein 21312
Nonprotein 62
Model geometry
r.m.s.d. bond length [Å] 0.0097
r.m.s.d. bond angle [°] 1.34
Average B-factor2]
Main chain 374
Side chain 338
Ramachandran analvsise (for 1333 residues)
Most favored 65.3
Allowed 27.9
Generously allowed 5.3
Disallowed 1.5
$

Tm: T. maritima, Bs: B. subtilis, Aa: A. aeolicus

#

Values in parenthesis refer to the highest resolution shell.

a

Rsym=hkli|Ii(hkl)I(hkl)|/hkli|Ii(hkl)|, where I(hkl) is the integrated intensity of the reflection.

b

From 11 selenium sites identified per SecA-SecYEG complex in the resolution range from 15 to 6 Å. NCS averaging included phase extension to 4.5 Å.

c

Number of SecA-SecY complexes per ciystallographic asymmetric unit.

d

In the asymmetric unit.

e

For one SecA-SecYEG complex.

Rwork=(|FoFc|)/Fo, where Fo and Fc are observed and calculated structure factors.

Ten percent of the data were excluded from refinement to calculate Rfree.