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. 2020 Mar 31;9:e53514. doi: 10.7554/eLife.53514

Figure 4. Photodissociation of the pyrrole water, displacement of the A-ring and its effect on the proteins scaffold.

(a). The observed difference electron density displayed with the DrBphPdark (blue) and DrBphP1ps (beige) structures around the A-ring, Asp207 and pyrrole water (PW). The structural model was inconclusive as to whether the A-ring twists around the double bond between the B- and A-ring, or whether it tilts downward hinged on the connection between C- and B-ring. (b). The regions of the pyrrole water (PW) and the area between the pyrrole rings show negative and positive densities, respectively. The observed difference electron density is contoured at 3.3σ. (c). Density displayed for the backbone below the A-ring, including side chains of the strictly conserved Ile208 and Tyr176 as well as the surrounding water network. Monomer A is shown in this figure.

Figure 4.

Figure 4—figure supplement 1. Comparison of observed and calculated difference electron densities in the A-ring region.

Figure 4—figure supplement 1.

(a). The observed difference electron density is displayed together with the DrBphPdark (blue) and the DrBphP1ps (beige) structures for monomer A. The data is shown around the A-ring, Asp207 and pyrrole water (PW). (b). For the backbone below the A-ring, side chains shown for the strictly conserved Ile208 and Tyr176 as well as the surrounding water network. (c). The same view as panel A displayed together with the calculated difference electron density. (d). The same view as panel B displayed together with the calculated difference electron density. The observed and calculated difference electron density maps are contoured at 3.3 σ and 3.5 σ, respectively.